Detailed information
Bioinformatically predicted
Overview
| Name | sbcB | Type | Machinery gene |
| Locus tag | QN061_RS06395 | Genome accession | NZ_CP126305 |
| Coordinates | 1379378..1380802 (-) | Length | 474 a.a. |
| NCBI ID | WP_038126983.1 | Uniprot ID | - |
| Organism | Vibrio fluvialis strain SD21SC3889PM | ||
| Function | promote homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1380984..1423102 | 1379378..1380802 | flank | 182 |
Gene organization within MGE regions
Location: 1379378..1423102
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QN061_RS06395 (QN061_06395) | sbcB | 1379378..1380802 (-) | 1425 | WP_038126983.1 | exodeoxyribonuclease I | Machinery gene |
| QN061_RS06400 (QN061_06400) | - | 1380984..1382177 (+) | 1194 | WP_020327584.1 | site-specific integrase | - |
| QN061_RS06405 (QN061_06405) | - | 1382913..1383527 (-) | 615 | WP_038126982.1 | hypothetical protein | - |
| QN061_RS06410 (QN061_06410) | - | 1383555..1384496 (-) | 942 | WP_200859658.1 | SMEK domain-containing protein | - |
| QN061_RS06415 (QN061_06415) | - | 1384782..1385078 (-) | 297 | WP_020327579.1 | hypothetical protein | - |
| QN061_RS06420 (QN061_06420) | - | 1385117..1385353 (-) | 237 | WP_020327578.1 | hypothetical protein | - |
| QN061_RS06425 (QN061_06425) | - | 1385417..1385791 (-) | 375 | WP_020327577.1 | hypothetical protein | - |
| QN061_RS06430 (QN061_06430) | - | 1385788..1386048 (-) | 261 | WP_020327576.1 | hypothetical protein | - |
| QN061_RS06435 (QN061_06435) | - | 1386203..1386478 (-) | 276 | WP_038126978.1 | hypothetical protein | - |
| QN061_RS06440 (QN061_06440) | - | 1387419..1388087 (-) | 669 | WP_020327573.1 | LexA family transcriptional regulator | - |
| QN061_RS06445 (QN061_06445) | - | 1388177..1388464 (+) | 288 | WP_051141144.1 | helix-turn-helix transcriptional regulator | - |
| QN061_RS06450 (QN061_06450) | - | 1388461..1389009 (+) | 549 | WP_020327572.1 | hypothetical protein | - |
| QN061_RS06455 (QN061_06455) | - | 1389202..1389957 (+) | 756 | WP_020327571.1 | helix-turn-helix domain-containing protein | - |
| QN061_RS06460 (QN061_06460) | - | 1389954..1390682 (+) | 729 | WP_038126973.1 | ATP-binding protein | - |
| QN061_RS06465 (QN061_06465) | - | 1390679..1391248 (+) | 570 | WP_038126971.1 | MT-A70 family methyltransferase | - |
| QN061_RS06470 (QN061_06470) | - | 1391248..1391829 (+) | 582 | WP_020327568.1 | hypothetical protein | - |
| QN061_RS06475 (QN061_06475) | - | 1392002..1393069 (+) | 1068 | WP_020327567.1 | hypothetical protein | - |
| QN061_RS06480 (QN061_06480) | - | 1393106..1393558 (+) | 453 | WP_051141142.1 | hypothetical protein | - |
| QN061_RS06485 (QN061_06485) | - | 1393555..1394253 (+) | 699 | WP_020327566.1 | hypothetical protein | - |
| QN061_RS06490 (QN061_06490) | - | 1394426..1394905 (+) | 480 | WP_038126969.1 | lysozyme | - |
| QN061_RS06495 (QN061_06495) | - | 1394902..1395381 (+) | 480 | WP_038126967.1 | lysis protein | - |
| QN061_RS06500 (QN061_06500) | - | 1395385..1395615 (+) | 231 | WP_020327562.1 | HP1 family phage holin | - |
| QN061_RS06505 (QN061_06505) | - | 1395976..1396449 (+) | 474 | WP_237733667.1 | DUF1441 family protein | - |
| QN061_RS06510 (QN061_06510) | - | 1396430..1398520 (+) | 2091 | WP_020327559.1 | terminase gpA endonuclease subunit | - |
| QN061_RS06515 (QN061_06515) | - | 1398517..1398735 (+) | 219 | WP_020327558.1 | hypothetical protein | - |
| QN061_RS06520 (QN061_06520) | - | 1398728..1400218 (+) | 1491 | WP_038126960.1 | phage portal protein | - |
| QN061_RS06525 (QN061_06525) | - | 1400211..1402382 (+) | 2172 | WP_284162130.1 | head maturation protease, ClpP-related | - |
| QN061_RS06530 (QN061_06530) | - | 1402447..1402785 (+) | 339 | WP_020327555.1 | hypothetical protein | - |
| QN061_RS06535 (QN061_06535) | - | 1402860..1403129 (+) | 270 | WP_233939889.1 | hypothetical protein | - |
| QN061_RS06540 (QN061_06540) | - | 1403101..1403631 (+) | 531 | WP_038126956.1 | hypothetical protein | - |
| QN061_RS06545 (QN061_06545) | - | 1403597..1404109 (+) | 513 | WP_020327552.1 | hypothetical protein | - |
| QN061_RS06550 (QN061_06550) | - | 1404066..1404767 (+) | 702 | WP_235048066.1 | phage baseplate assembly protein V | - |
| QN061_RS06555 (QN061_06555) | - | 1404764..1405096 (+) | 333 | WP_020327550.1 | hypothetical protein | - |
| QN061_RS06560 (QN061_06560) | - | 1405093..1406073 (+) | 981 | WP_020327548.1 | baseplate J/gp47 family protein | - |
| QN061_RS06565 (QN061_06565) | - | 1406057..1406674 (+) | 618 | WP_020327547.1 | phage tail protein | - |
| QN061_RS06570 (QN061_06570) | - | 1406667..1408061 (+) | 1395 | WP_020327546.1 | phage tail protein | - |
| QN061_RS06575 (QN061_06575) | - | 1408065..1408595 (+) | 531 | WP_020327545.1 | hypothetical protein | - |
| QN061_RS06580 (QN061_06580) | - | 1408666..1408869 (+) | 204 | WP_038126954.1 | hypothetical protein | - |
| QN061_RS06585 (QN061_06585) | - | 1408872..1410041 (+) | 1170 | WP_020327543.1 | phage tail sheath monomer | - |
| QN061_RS06590 (QN061_06590) | - | 1410034..1410510 (+) | 477 | WP_020327540.1 | phage major tail tube protein | - |
| QN061_RS06595 (QN061_06595) | - | 1410573..1411277 (+) | 705 | WP_020327539.1 | phage tail assembly protein | - |
| QN061_RS06600 (QN061_06600) | - | 1411389..1414115 (+) | 2727 | WP_020327538.1 | phage tail tape measure protein | - |
| QN061_RS06605 (QN061_06605) | - | 1414118..1414483 (+) | 366 | WP_020327537.1 | phage tail protein | - |
| QN061_RS06610 (QN061_06610) | - | 1414686..1415654 (+) | 969 | WP_020327536.1 | contractile injection system protein, VgrG/Pvc8 family | - |
| QN061_RS06615 (QN061_06615) | - | 1415654..1416892 (+) | 1239 | WP_020327535.1 | tyrosine-type recombinase/integrase | - |
| QN061_RS06620 (QN061_06620) | - | 1416970..1417260 (+) | 291 | WP_080650673.1 | helix-turn-helix domain-containing protein | - |
| QN061_RS06625 (QN061_06625) | - | 1417316..1418038 (+) | 723 | WP_152490432.1 | hypothetical protein | - |
| QN061_RS06630 (QN061_06630) | - | 1418079..1419056 (+) | 978 | WP_020327533.1 | HNH endonuclease | - |
| QN061_RS06635 (QN061_06635) | - | 1419156..1419359 (-) | 204 | WP_020327532.1 | hypothetical protein | - |
| QN061_RS06640 (QN061_06640) | - | 1419597..1420094 (+) | 498 | WP_284162131.1 | restriction endonuclease | - |
| QN061_RS06645 (QN061_06645) | - | 1420218..1421069 (-) | 852 | WP_020327530.1 | hypothetical protein | - |
| QN061_RS06650 (QN061_06650) | - | 1421585..1422028 (-) | 444 | WP_020327529.1 | hypothetical protein | - |
| QN061_RS06655 (QN061_06655) | - | 1422018..1422338 (-) | 321 | WP_032081666.1 | hypothetical protein | - |
| QN061_RS06660 (QN061_06660) | - | 1422524..1423102 (-) | 579 | WP_020327528.1 | phage antirepressor N-terminal domain-containing protein | - |
Sequence
Protein
Download Length: 474 a.a. Molecular weight: 54279.69 Da Isoelectric Point: 5.0768
>NTDB_id=837428 QN061_RS06395 WP_038126983.1 1379378..1380802(-) (sbcB) [Vibrio fluvialis strain SD21SC3889PM]
MNNSEQPTFFFFDYETWGTSPAKDRPSQFAGVRTDMDFNIIGEPLVLYCQLPADYLPAPEAALITGIIPQKAMAQGLSEP
EFIAKIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYAWSWQNGNSRWDLLDVMRACHALRPEGIVWPENDEGFT
SFKLEHLSKANGIEHENAHDAMADVIATIELAKKVKAAQPKLFDYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQY
TSWIVPIAWHPTNQNAVIVADLAKDPQPLIDLDVDALHARLYTRHDDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAA
TIGIDRELCLANLARIRQHPEIREKLAALFGIEREFEASNDVDTQLYDGFFSPADKAAMEIIRSTKPELLGELDITFSDK
RIEPLLFRYRARNFPWTLGENDQRRWANHCRDYYETHLPDYMLNLENLVHEHESDEKKIAILKSVYQYVEKLAS
MNNSEQPTFFFFDYETWGTSPAKDRPSQFAGVRTDMDFNIIGEPLVLYCQLPADYLPAPEAALITGIIPQKAMAQGLSEP
EFIAKIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYAWSWQNGNSRWDLLDVMRACHALRPEGIVWPENDEGFT
SFKLEHLSKANGIEHENAHDAMADVIATIELAKKVKAAQPKLFDYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQY
TSWIVPIAWHPTNQNAVIVADLAKDPQPLIDLDVDALHARLYTRHDDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAA
TIGIDRELCLANLARIRQHPEIREKLAALFGIEREFEASNDVDTQLYDGFFSPADKAAMEIIRSTKPELLGELDITFSDK
RIEPLLFRYRARNFPWTLGENDQRRWANHCRDYYETHLPDYMLNLENLVHEHESDEKKIAILKSVYQYVEKLAS
Nucleotide
Download Length: 1425 bp
>NTDB_id=837428 QN061_RS06395 WP_038126983.1 1379378..1380802(-) (sbcB) [Vibrio fluvialis strain SD21SC3889PM]
ATGAATAACTCAGAACAACCGACATTCTTCTTCTTTGACTACGAGACGTGGGGCACCAGCCCGGCCAAAGATCGTCCGAG
TCAGTTTGCTGGTGTGCGCACAGACATGGATTTCAACATCATTGGCGAGCCTTTGGTGCTCTATTGCCAACTGCCAGCGG
ATTATCTGCCAGCGCCAGAAGCCGCGCTGATTACCGGCATCATTCCACAAAAAGCGATGGCACAAGGGCTTTCAGAGCCG
GAGTTTATTGCCAAAATTCACGCAGAACTGTCGACACCCAACACCACCAGCCTGGGTTACAACAGCATTCGTTTCGACGA
TGAAGTGACACGTTATACCTGCTACCGCAACTTTCTCGACCCGTATGCCTGGAGCTGGCAAAACGGCAACTCACGTTGGG
ATCTGCTCGATGTGATGCGTGCGTGTCATGCGCTGCGCCCGGAAGGCATTGTGTGGCCGGAAAACGACGAAGGCTTTACC
AGCTTCAAACTTGAGCATTTGTCCAAAGCCAACGGCATTGAACACGAAAATGCGCACGATGCGATGGCCGATGTGATTGC
GACCATTGAACTGGCGAAGAAAGTCAAAGCGGCACAGCCCAAACTGTTCGATTATTTCTTCTCTATGCGCCATAAGCGCA
AACTGAATGAACTGATTGATATCGTCAACATGACGCCGCTGATGCACGTGTCCGGCATGCTGGGTCGCGAGTGTCAATAC
ACCAGTTGGATTGTGCCGATAGCCTGGCACCCTACCAATCAGAACGCCGTGATTGTGGCTGATTTGGCCAAAGATCCACA
GCCGCTGATCGACTTAGATGTGGACGCTCTGCATGCACGTCTATATACCCGTCACGATGATTTAGCACCGGATGAACTGC
CTGTTCCCGTCAAACTGGTTCATCTCAATAAATGCCCGATTCTGGCACCGGCGAAAACGCTGACCGCAGAAAATGCCGCT
ACCATCGGTATTGATCGCGAATTGTGTCTAGCGAATCTGGCTCGCATTCGTCAGCATCCGGAAATTCGAGAGAAGCTGGC
AGCCCTCTTTGGCATTGAACGAGAATTTGAAGCATCGAACGATGTTGATACACAGCTCTATGATGGATTCTTCTCACCTG
CGGATAAAGCGGCGATGGAGATCATCCGTTCAACCAAACCTGAGCTGCTTGGCGAGCTGGATATTACCTTCAGCGATAAA
CGCATCGAACCGCTGCTGTTTCGCTATCGCGCACGTAACTTCCCTTGGACGCTGGGTGAAAATGACCAGCGCCGCTGGGC
GAACCATTGCCGCGACTACTACGAAACACACCTGCCAGATTACATGCTGAATCTGGAAAACTTAGTTCATGAACATGAAA
GTGACGAAAAGAAAATCGCCATTTTAAAATCCGTTTACCAATACGTAGAGAAGCTAGCCTCTTAG
ATGAATAACTCAGAACAACCGACATTCTTCTTCTTTGACTACGAGACGTGGGGCACCAGCCCGGCCAAAGATCGTCCGAG
TCAGTTTGCTGGTGTGCGCACAGACATGGATTTCAACATCATTGGCGAGCCTTTGGTGCTCTATTGCCAACTGCCAGCGG
ATTATCTGCCAGCGCCAGAAGCCGCGCTGATTACCGGCATCATTCCACAAAAAGCGATGGCACAAGGGCTTTCAGAGCCG
GAGTTTATTGCCAAAATTCACGCAGAACTGTCGACACCCAACACCACCAGCCTGGGTTACAACAGCATTCGTTTCGACGA
TGAAGTGACACGTTATACCTGCTACCGCAACTTTCTCGACCCGTATGCCTGGAGCTGGCAAAACGGCAACTCACGTTGGG
ATCTGCTCGATGTGATGCGTGCGTGTCATGCGCTGCGCCCGGAAGGCATTGTGTGGCCGGAAAACGACGAAGGCTTTACC
AGCTTCAAACTTGAGCATTTGTCCAAAGCCAACGGCATTGAACACGAAAATGCGCACGATGCGATGGCCGATGTGATTGC
GACCATTGAACTGGCGAAGAAAGTCAAAGCGGCACAGCCCAAACTGTTCGATTATTTCTTCTCTATGCGCCATAAGCGCA
AACTGAATGAACTGATTGATATCGTCAACATGACGCCGCTGATGCACGTGTCCGGCATGCTGGGTCGCGAGTGTCAATAC
ACCAGTTGGATTGTGCCGATAGCCTGGCACCCTACCAATCAGAACGCCGTGATTGTGGCTGATTTGGCCAAAGATCCACA
GCCGCTGATCGACTTAGATGTGGACGCTCTGCATGCACGTCTATATACCCGTCACGATGATTTAGCACCGGATGAACTGC
CTGTTCCCGTCAAACTGGTTCATCTCAATAAATGCCCGATTCTGGCACCGGCGAAAACGCTGACCGCAGAAAATGCCGCT
ACCATCGGTATTGATCGCGAATTGTGTCTAGCGAATCTGGCTCGCATTCGTCAGCATCCGGAAATTCGAGAGAAGCTGGC
AGCCCTCTTTGGCATTGAACGAGAATTTGAAGCATCGAACGATGTTGATACACAGCTCTATGATGGATTCTTCTCACCTG
CGGATAAAGCGGCGATGGAGATCATCCGTTCAACCAAACCTGAGCTGCTTGGCGAGCTGGATATTACCTTCAGCGATAAA
CGCATCGAACCGCTGCTGTTTCGCTATCGCGCACGTAACTTCCCTTGGACGCTGGGTGAAAATGACCAGCGCCGCTGGGC
GAACCATTGCCGCGACTACTACGAAACACACCTGCCAGATTACATGCTGAATCTGGAAAACTTAGTTCATGAACATGAAA
GTGACGAAAAGAAAATCGCCATTTTAAAATCCGTTTACCAATACGTAGAGAAGCTAGCCTCTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sbcB | Vibrio cholerae O1 biovar El Tor strain E7946 |
82.875 |
99.789 |
0.827 |