Detailed information NTG0837414

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QN061_RS02030
• Genome accession: NZ_CP126305
• Coordinates: 422332..423318 (+)
• Length: 328 a.a.
• NCBI ID: WP_020429689.1
• Uniprot ID: A0AAX2LR86
• Organism: Vibrio fluvialis strain SD21SC3889PM
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 417332..428318

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QN061_RS01995 (QN061_01995)	ftsB	417401..417682 (+)	282	WP_020330423.1	cell division protein FtsB	-
QN061_RS02000 (QN061_02000)	ispD	417679..418389 (+)	711	WP_020429679.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QN061_RS02005 (QN061_02005)	ispF	418392..418868 (+)	477	WP_020429681.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QN061_RS02010 (QN061_02010)	truD	418900..419946 (+)	1047	WP_020429683.1	tRNA pseudouridine(13) synthase TruD	-
QN061_RS02015 (QN061_02015)	surE	419939..420706 (+)	768	WP_020330427.1	5'/3'-nucleotidase SurE	-
QN061_RS02020 (QN061_02020)	-	420699..421325 (+)	627	WP_020429685.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
QN061_RS02025 (QN061_02025)	nlpD	421325..422260 (+)	936	WP_020429687.1	murein hydrolase activator NlpD	-
QN061_RS02030 (QN061_02030)	rpoS	422332..423318 (+)	987	WP_020429689.1	RNA polymerase sigma factor RpoS	Regulator
QN061_RS02035 (QN061_02035)	mutS	423387..425948 (-)	2562	WP_020429690.1	DNA mismatch repair protein MutS	-
QN061_RS02040 (QN061_02040)	pncC	426033..426521 (+)	489	WP_020330432.1	nicotinamide-nucleotide amidase	-
QN061_RS02045 (QN061_02045)	recA	426694..427746 (+)	1053	WP_020330433.1	recombinase RecA	Machinery gene
QN061_RS02050 (QN061_02050)	recX	427816..428274 (+)	459	WP_020330434.1	recombination regulator RecX	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37678.46 Da
• Isoelectric Point: 4.4184

>NTDB_id=837414 QN061_RS02030 WP_020429689.1 422332..423318(+) (rpoS) [Vibrio fluvialis strain SD21SC3889PM]
MSISNTATKVEEFDFDPETANLAEVEEELATNNDQSEEIREEFDASTKSLDATQMYLSEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAVELDKPVDDVSKMLRLNERISSVDTPIGGDGDKALLDIIPDINNSD
PEVSTQDDDIRDSLVAWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILMKQGLNME
SLFNVEND

Nucleotide

• Length: 987 bp

>NTDB_id=837414 QN061_RS02030 WP_020429689.1 422332..423318(+) (rpoS) [Vibrio fluvialis strain SD21SC3889PM]
ATGAGTATCAGCAATACAGCCACTAAAGTCGAAGAGTTTGATTTTGATCCTGAAACAGCGAATCTTGCTGAGGTCGAAGA
AGAACTTGCTACCAACAATGACCAGTCAGAAGAGATTCGTGAAGAGTTTGACGCTTCAACGAAAAGCCTCGATGCAACTC
AGATGTATCTGAGTGAGATTGGTTTCTCACCACTGTTAACCGCCGAAGAAGAAGTACTCTACGCTCGCCGTGCTCTGCGT
GGCGATGAAGCTGCGCGCAAACGCATGATCGAGAGTAACTTACGTCTGGTGGTCAAGATTTCCCGCCGTTATAGTAATCG
TGGCCTGGCACTGCTTGACCTGATTGAAGAGGGTAACCTCGGCCTGATTCGTGCGGTAGAGAAATTCGACCCAGAACGCG
GTTTCCGTTTTTCGACTTACGCCACCTGGTGGATTCGTCAGACCATTGAACGTGCTCTGATGAACCAAACCCGCACCATT
CGTTTACCGATTCATGTGGTGAAAGAGCTGAATATTTACCTGCGTACTGCACGTGAACTGTCTCAGAAACTGGACCACGA
ACCAACCGCAGAAGAAATAGCGGTTGAACTGGATAAGCCAGTGGATGATGTCAGCAAAATGCTGCGCCTGAATGAGCGCA
TCAGCTCTGTGGACACTCCGATTGGCGGTGACGGTGATAAGGCGTTGCTGGATATCATTCCGGACATCAACAACTCTGAT
CCTGAAGTCTCCACGCAAGATGACGACATTCGTGATTCGTTGGTGGCTTGGCTGGATGAGCTCAATCCGAAACAGAAAGA
AGTGCTGGCACGCCGTTTTGGCTTGTTGGGCTATGAACCTTCGACGCTGGAAGAAGTGGGCCGCGAGATTAATCTGACTC
GTGAACGTGTACGCCAAATTCAGGTTGAAGGTCTGCGCCGTCTGAGAGAGATCCTGATGAAACAAGGCCTGAATATGGAA
TCGCTGTTCAACGTGGAAAACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	87.126	100	0.887