Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   VA249_RS11730 Genome accession   NZ_AP024165
Coordinates   2570290..2570808 (-) Length   172 a.a.
NCBI ID   WP_221068093.1    Uniprot ID   -
Organism   Vibrio alfacsensis strain 04Ya108     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2565290..2575808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VA249_RS11710 (VYA_22280) rpsP 2565806..2566054 (-) 249 WP_004410028.1 30S ribosomal protein S16 -
  VA249_RS11715 (VYA_22290) ffh 2566264..2567643 (-) 1380 WP_128810209.1 signal recognition particle protein -
  VA249_RS11720 (VYA_22300) - 2567857..2568651 (+) 795 WP_128810208.1 cytochrome C assembly family protein -
  VA249_RS11725 (VYA_22310) - 2568896..2570170 (+) 1275 WP_221068092.1 HlyC/CorC family transporter -
  VA249_RS11730 (VYA_22320) luxS 2570290..2570808 (-) 519 WP_221068093.1 S-ribosylhomocysteine lyase Regulator
  VA249_RS11735 (VYA_22330) - 2570898..2571503 (-) 606 WP_211915993.1 hypothetical protein -
  VA249_RS11740 (VYA_22340) gshA 2571549..2573117 (-) 1569 WP_221068094.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19138.92 Da        Isoelectric Point: 4.8563

>NTDB_id=83732 VA249_RS11730 WP_221068093.1 2570290..2570808(-) (luxS) [Vibrio alfacsensis strain 04Ya108]
MPLLDSFTVDHTRMHAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDRVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKLIAQNILDAGVSVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=83732 VA249_RS11730 WP_221068093.1 2570290..2570808(-) (luxS) [Vibrio alfacsensis strain 04Ya108]
ATGCCTTTATTAGACAGTTTTACCGTAGATCACACTCGTATGCATGCCCCAGCGGTTCGCGTGGCAAAAACAATGCAAAC
TCCAAAAGGGGATACGATCACAGTCTTTGATTTACGTTTTACCGCCCCAAACAAAGACATTCTTTCTGAGAAAGGGATCC
ATACGTTAGAGCACTTGTATGCTGGCTTTATGCGCAATCACCTAAATGGTGACCGCGTTGAAATCATTGATATTTCGCCA
ATGGGCTGCCGTACAGGTTTTTACATGAGCCTAATTGGTACGCCTTCAGAGCAACAAGTGGCTGACGCTTGGATTGCAGC
AATGGAAGATGTGCTAAAGGTTGAGAGTCAAAATAAAATCCCAGAGCTGAATGAATACCAATGTGGTACGGCTGCGATGC
ATTCATTGGATGAAGCAAAGCTAATCGCGCAGAATATTCTTGATGCGGGAGTTTCAGTCAACAAGAACGATGAACTTGCT
TTACCAGAATCGATGTTGAAAGAACTTCGTATTGATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

86.55

99.419

0.86

Multiple sequence alignment