Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   VLW43_RS08020 Genome accession   NZ_CP141736
Coordinates   1634876..1635505 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain 2023CK-01509     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1629876..1640505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VLW43_RS08000 (VLW43_08000) ycbZ 1630265..1632025 (-) 1761 WP_000156518.1 Lon protease family protein -
  VLW43_RS08005 (VLW43_08005) matP 1632211..1632663 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  VLW43_RS08010 (VLW43_08010) ompA 1632739..1633791 (-) 1053 WP_001361736.1 porin OmpA -
  VLW43_RS08015 (VLW43_08015) sulA 1634148..1634657 (-) 510 WP_000288706.1 SOS-induced cell division inhibitor SulA -
  VLW43_RS08020 (VLW43_08020) sxy/tfoX 1634876..1635505 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  VLW43_RS08025 (VLW43_08025) yccS 1635468..1637630 (-) 2163 WP_123010355.1 YccS family putative transporter -
  VLW43_RS08030 (VLW43_08030) yccF 1637640..1638086 (-) 447 WP_001261235.1 YccF domain-containing protein -
  VLW43_RS08035 (VLW43_08035) helD 1638209..1640263 (+) 2055 WP_000420536.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=837273 VLW43_RS08020 WP_000839153.1 1634876..1635505(+) (sxy/tfoX) [Escherichia coli strain 2023CK-01509]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=837273 VLW43_RS08020 WP_000839153.1 1634876..1635505(+) (sxy/tfoX) [Escherichia coli strain 2023CK-01509]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGATGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1