Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   P7644_RS18775 Genome accession   NZ_CP126238
Coordinates   3948480..3950012 (-) Length   510 a.a.
NCBI ID   WP_404300764.1    Uniprot ID   -
Organism   Alicycliphilus denitrificans strain Ylb10     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3943480..3955012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7644_RS18755 (P7644_18725) - 3943876..3945147 (-) 1272 WP_404300759.1 class I SAM-dependent RNA methyltransferase -
  P7644_RS18760 (P7644_18730) - 3945315..3947138 (+) 1824 WP_404300760.1 methyl-accepting chemotaxis protein -
  P7644_RS18765 (P7644_18735) - 3947287..3947928 (+) 642 WP_404300761.1 PEP-CTERM sorting domain-containing protein -
  P7644_RS18770 (P7644_18740) - 3948004..3948441 (-) 438 WP_404300763.1 acyl-CoA thioesterase -
  P7644_RS18775 (P7644_18745) rpoN/rpoN1 3948480..3950012 (-) 1533 WP_404300764.1 RNA polymerase factor sigma-54 Machinery gene
  P7644_RS18780 (P7644_18750) lptB 3950059..3950847 (-) 789 WP_404300765.1 LPS export ABC transporter ATP-binding protein -
  P7644_RS18785 (P7644_18755) lptA 3950856..3951500 (-) 645 WP_404300766.1 lipopolysaccharide transport periplasmic protein LptA -
  P7644_RS18790 (P7644_18760) - 3951614..3952249 (-) 636 WP_404300767.1 thiol:disulfide interchange protein DsbA/DsbL -
  P7644_RS18795 (P7644_18765) - 3952309..3952953 (-) 645 WP_404300768.1 SPOR domain-containing protein -
  P7644_RS18800 (P7644_18770) argS 3952965..3954644 (-) 1680 WP_404300769.1 arginine--tRNA ligase -

Sequence

Protein


Download         Length: 510 a.a.        Molecular weight: 55844.86 Da        Isoelectric Point: 4.6798

>NTDB_id=837238 P7644_RS18775 WP_404300764.1 3948480..3950012(-) (rpoN/rpoN1) [Alicycliphilus denitrificans strain Ylb10]
MKPNLSLRVSQHLALTPQLQQSIRLLQLSTLELAQEVEQMLDDNPFLERASEEGPQEPEQYPAGGATYSEATGADAASVD
AENDAEMPAVTSPSDWEGDGSMDAATEDGEWGGDGMLRNGGSGDGEEADATELARSHESLTDFLHRQALALRLSELDRAA
LRFLIESLNDDGYLDESLESLAISLAGVDDPAQLEELVHRFTVALGLLQSLEPAGVGARDLAECLTLQLHAMNQCEEGDP
AVVQAALCICRQPLDLLARRDLRRLAQACGSSEDDTRSAMALITRLEPRPGRRFADVERNVIVPDVIVKKTGRGAQQTFS
VQLNPDVMPRLRVHDIYASALRGGSKGEGHQALQTRLQEARWFIKNIQQRFDTILRVSRAIVERQKNFFVHGELAMRPLV
LREIADELGLHESTISRVTSAKYMGTPQGTFELKYFFGSGLGTETGGNASSTAVRALIKQFVAAEDPHKPLSDNQIAEML
KEQGIECARRTVAKYREALKIAPANLRKAL

Nucleotide


Download         Length: 1533 bp        

>NTDB_id=837238 P7644_RS18775 WP_404300764.1 3948480..3950012(-) (rpoN/rpoN1) [Alicycliphilus denitrificans strain Ylb10]
ATGAAGCCGAATCTGTCACTGCGCGTCTCGCAGCACCTGGCGCTTACGCCGCAGCTGCAGCAGTCGATTCGCCTGCTGCA
GCTGTCCACGCTGGAGCTGGCCCAGGAGGTCGAGCAGATGCTCGATGACAACCCGTTCCTGGAGCGGGCTTCCGAGGAGG
GGCCGCAGGAGCCCGAGCAGTATCCGGCCGGTGGTGCTACATATTCAGAAGCTACTGGCGCAGATGCAGCAAGCGTTGAT
GCCGAAAATGATGCTGAAATGCCCGCCGTTACCAGCCCCAGCGACTGGGAGGGCGACGGCAGCATGGACGCGGCCACAGA
AGACGGGGAATGGGGGGGGGATGGCATGCTGCGCAACGGCGGCAGCGGCGACGGCGAGGAGGCCGATGCTACCGAGCTGG
CGCGCAGCCACGAGTCCCTGACCGACTTCCTGCACCGCCAGGCGCTGGCGCTGCGCCTGTCCGAGCTGGACAGGGCGGCG
CTGCGTTTTCTCATCGAGTCGCTGAACGACGATGGCTACCTGGATGAATCGCTGGAGTCCCTGGCCATCAGCCTGGCCGG
GGTGGATGACCCGGCGCAGCTTGAGGAGCTGGTGCACCGCTTCACCGTCGCCCTGGGCCTGCTGCAAAGCCTGGAGCCGG
CAGGCGTGGGCGCACGCGACCTGGCCGAATGCTTGACGCTGCAGCTGCACGCCATGAATCAGTGCGAGGAGGGCGATCCG
GCCGTGGTGCAGGCCGCGCTGTGCATCTGCCGCCAGCCGCTGGACCTGCTGGCGCGGCGCGACCTGCGCCGCCTGGCCCA
GGCCTGCGGCAGCAGCGAGGATGACACGCGCAGCGCCATGGCGCTGATCACGCGGCTGGAGCCGCGCCCCGGCCGGCGCT
TTGCCGACGTGGAGCGCAACGTCATCGTGCCCGACGTGATCGTGAAGAAAACCGGGCGCGGCGCGCAGCAGACCTTCAGC
GTGCAGCTCAACCCCGATGTCATGCCGCGCCTGCGCGTGCACGACATCTACGCCAGCGCCCTGCGCGGCGGCAGCAAAGG
CGAGGGCCACCAGGCGCTGCAGACCCGGCTGCAGGAGGCGCGCTGGTTCATCAAGAACATCCAGCAGCGCTTTGACACCA
TCCTGCGCGTGTCGCGCGCCATCGTGGAGCGGCAAAAGAACTTCTTCGTGCACGGCGAGCTGGCCATGCGCCCGCTGGTG
CTGCGTGAGATCGCCGACGAACTGGGCCTGCACGAGTCCACCATCAGCCGCGTGACCAGCGCCAAGTACATGGGCACGCC
CCAGGGCACGTTCGAGCTCAAGTATTTCTTCGGCTCGGGCCTGGGCACCGAAACCGGTGGCAACGCGTCCAGCACCGCGG
TGCGCGCGCTCATCAAGCAGTTCGTGGCCGCAGAAGACCCGCACAAGCCGCTGTCGGACAACCAGATCGCCGAAATGCTC
AAGGAGCAGGGCATAGAGTGCGCGCGCCGCACCGTGGCCAAGTACCGCGAGGCGCTGAAGATCGCACCGGCCAACCTGCG
CAAGGCGCTATAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(352-508)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(131-337)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

52.885

100

0.539