Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   P7644_RS04690 Genome accession   NZ_CP126238
Coordinates   1004209..1005324 (-) Length   371 a.a.
NCBI ID   WP_404301895.1    Uniprot ID   -
Organism   Alicycliphilus denitrificans strain Ylb10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 999209..1010324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7644_RS04655 (P7644_04640) - 999314..1000318 (-) 1005 WP_404301885.1 Bug family tripartite tricarboxylate transporter substrate binding protein -
  P7644_RS04660 (P7644_04645) rpoH 1000397..1001332 (-) 936 WP_404301886.1 RNA polymerase sigma factor RpoH -
  P7644_RS04665 (P7644_04650) - 1001613..1001753 (+) 141 WP_404301888.1 hypothetical protein -
  P7644_RS04670 (P7644_04655) - 1001750..1002022 (+) 273 WP_404301889.1 VF530 family DNA-binding protein -
  P7644_RS04675 (P7644_04660) - 1002072..1002470 (+) 399 WP_404301891.1 hypothetical protein -
  P7644_RS04680 (P7644_04665) - 1002688..1003755 (+) 1068 WP_404301893.1 alcohol dehydrogenase -
  P7644_RS04685 (P7644_04670) cutA 1003806..1004135 (+) 330 WP_404301894.1 divalent-cation tolerance protein CutA -
  P7644_RS04690 (P7644_04675) pilA 1004209..1005324 (-) 1116 WP_404301895.1 signal recognition particle-docking protein FtsY Machinery gene
  P7644_RS04695 (P7644_04680) - 1005354..1006784 (+) 1431 WP_404301897.1 M16 family metallopeptidase -
  P7644_RS04700 (P7644_04685) - 1006799..1008157 (+) 1359 WP_404301898.1 M16 family metallopeptidase -
  P7644_RS04705 (P7644_04690) rsmD 1008154..1008774 (+) 621 WP_404301900.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  P7644_RS04710 (P7644_04695) coaD 1008905..1009393 (+) 489 WP_404301901.1 pantetheine-phosphate adenylyltransferase -
  P7644_RS04715 (P7644_04700) - 1009443..1009757 (-) 315 WP_404301903.1 BON domain-containing protein -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 39018.59 Da        Isoelectric Point: 5.7333

>NTDB_id=837231 P7644_RS04690 WP_404301895.1 1004209..1005324(-) (pilA) [Alicycliphilus denitrificans strain Ylb10]
MFSFFKKKSPSPAEPASAPAPQAEAPASGGAFGWLRKSLGGADEPAAAMAQAEPAADQAPPAVPEPTPKPEGQRQGWMER
LKSGLRKTGSSIATVFTGTQINDALYEELEDALLMADTGVKATQHLLDDLKRRVKEAKATEPAAVKALLADALADLLRPL
EKPLVIGEHTPTVIMVAGVNGAGKTTSIGKLTRHLADHGESVLLAAADTFRAAAREQLGVWATRNLVEIVSQEGGDPAAV
SFDAVTAGRARGKDVVLVDTAGRLPTQLHLMEELKKIRRVVTKADAGAPHEVLLVIDGNTGQNALTQVRAFDDALQLTGL
IVTKLDGTAKGGVLAAIAQDRPVPVYFIGVGEKMEDLETFNAREFAQALLA

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=837231 P7644_RS04690 WP_404301895.1 1004209..1005324(-) (pilA) [Alicycliphilus denitrificans strain Ylb10]
ATGTTCAGTTTTTTCAAGAAAAAATCCCCCTCCCCCGCCGAACCCGCCAGCGCGCCGGCGCCGCAGGCCGAGGCACCCGC
CAGCGGCGGCGCCTTTGGCTGGCTGCGCAAGTCCCTGGGCGGCGCGGACGAGCCCGCCGCAGCCATGGCGCAGGCCGAAC
CCGCGGCAGACCAGGCCCCGCCCGCCGTGCCCGAGCCAACGCCAAAGCCCGAGGGCCAGCGCCAGGGCTGGATGGAGCGC
CTGAAATCCGGCCTGCGCAAGACCGGCAGCTCCATCGCCACCGTCTTCACCGGCACGCAGATCAACGACGCGCTGTACGA
GGAGCTGGAGGACGCGCTGCTGATGGCCGACACCGGCGTGAAGGCCACGCAGCACCTGCTCGATGACCTGAAACGCCGCG
TAAAGGAGGCCAAGGCGACAGAGCCCGCCGCCGTCAAGGCCCTGCTGGCCGACGCCCTGGCCGACCTGCTGCGCCCGCTG
GAAAAGCCCCTGGTGATCGGCGAGCACACCCCCACCGTGATCATGGTGGCGGGCGTGAACGGCGCGGGCAAGACCACCTC
CATCGGCAAGCTCACCCGGCACCTGGCTGATCACGGCGAGAGCGTGCTGCTGGCCGCGGCCGACACCTTCCGCGCCGCGG
CGCGCGAGCAGCTGGGCGTCTGGGCCACGCGCAACCTGGTGGAGATCGTGAGCCAGGAGGGTGGCGATCCGGCCGCCGTG
AGCTTTGACGCCGTCACCGCCGGCCGCGCGCGCGGCAAGGACGTGGTGCTGGTGGACACGGCCGGGCGCCTGCCCACCCA
GCTGCACCTGATGGAGGAGCTGAAGAAGATCCGCCGCGTGGTCACCAAGGCCGACGCCGGCGCCCCGCACGAGGTGCTGC
TGGTCATCGACGGTAACACCGGCCAGAACGCCCTGACCCAGGTGCGCGCCTTCGACGACGCGCTGCAGCTCACCGGCCTG
ATCGTCACAAAATTAGACGGCACGGCCAAGGGCGGCGTGCTGGCGGCCATCGCCCAGGACCGGCCCGTGCCGGTCTACTT
CATCGGCGTGGGCGAGAAGATGGAAGACCTGGAAACCTTCAACGCGCGCGAATTCGCGCAGGCGCTGCTGGCTTGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(171-370)

SRP54-type protein, helical bundle domain (SRP54_N)

(90-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

58.491

85.714

0.501