Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QN243_RS15240 Genome accession   NZ_CP126172
Coordinates   3646670..3648055 (-) Length   461 a.a.
NCBI ID   WP_160964389.1    Uniprot ID   -
Organism   Xanthomonas rydalmerensis strain DAR34883     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3641670..3653055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN243_RS15225 (QN243_15225) - 3643202..3644503 (+) 1302 WP_317843580.1 histidine-type phosphatase -
  QN243_RS15230 (QN243_15230) - 3644614..3645918 (+) 1305 WP_317843581.1 jacalin-like lectin -
  QN243_RS15235 (QN243_15235) - 3646199..3646585 (-) 387 WP_160964390.1 DUF805 domain-containing protein -
  QN243_RS15240 (QN243_15240) radA 3646670..3648055 (-) 1386 WP_160964389.1 DNA repair protein RadA Machinery gene
  QN243_RS15245 (QN243_15245) - 3648372..3648908 (-) 537 WP_160964388.1 adenylate kinase -
  QN243_RS15250 (QN243_15250) - 3649150..3651039 (-) 1890 WP_160964387.1 tetratricopeptide repeat protein -
  QN243_RS15255 (QN243_15255) - 3651205..3651975 (-) 771 WP_317843582.1 SDR family NAD(P)-dependent oxidoreductase -
  QN243_RS15260 (QN243_15260) - 3652111..3652548 (+) 438 WP_317843583.1 MarR family winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 48386.66 Da        Isoelectric Point: 7.4579

>NTDB_id=837079 QN243_RS15240 WP_160964389.1 3646670..3648055(-) (radA) [Xanthomonas rydalmerensis strain DAR34883]
MAKAKTAYVCGECGAEYSKWQGQCVECGAWNTLSEIVLESAATAKAPAAARRSGWAGKAEAPKITALKDVEHRDQARVST
GIGEFDRVLGGGLVEGAVVLIGGDPGIGKSTLLLQALAKMAGTLPVLYVTGEESLGQVAGRAVRLDLPLDGLNALAETGI
EHILQHASAARPKLIVADSVQTLWTEALTAAPGSVSQVRESAARLVRYAKETGTAVFLVGHVTKEGGIAGPRVLEHMVDA
VLYFEGESGSRFRLLRAFKNRFGAVNELGVFAMGEKGLKEVSNPSAIFLSGGSAHQPGSCVMVTREGTRPLMVEVQALVD
ASPLSNPRRVAVGLEQNRLAMLLAVLHRHGGIVVGDQDVFVNVVGGIRVQETAADLPVLLAVLSSLRDRPLAEKTIAFGE
VGLSGEIRPVPNGEDRLREAATHGFKRAIVPKANAPKTGTVKGMEVIAVERLAQALEAASE

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=837079 QN243_RS15240 WP_160964389.1 3646670..3648055(-) (radA) [Xanthomonas rydalmerensis strain DAR34883]
ATGGCGAAAGCGAAAACGGCCTATGTCTGCGGCGAGTGCGGCGCCGAGTACAGCAAGTGGCAGGGCCAGTGCGTCGAATG
CGGCGCCTGGAACACGCTGAGCGAGATCGTGCTGGAGAGCGCGGCCACGGCCAAGGCGCCGGCCGCGGCGCGGCGCAGCG
GCTGGGCCGGCAAGGCCGAGGCGCCGAAGATCACCGCGCTCAAGGACGTGGAGCATCGCGACCAGGCGCGCGTGTCCACC
GGCATCGGCGAGTTCGACCGGGTGCTCGGTGGCGGCCTGGTCGAGGGCGCGGTGGTCCTGATCGGTGGCGATCCGGGCAT
CGGCAAGTCGACCCTGCTGCTGCAGGCGCTGGCGAAGATGGCCGGCACCTTGCCGGTGCTGTACGTGACCGGCGAGGAAT
CGCTGGGCCAGGTCGCCGGGCGCGCGGTGCGCCTGGACCTGCCGCTGGACGGCCTCAACGCGCTGGCCGAGACCGGCATC
GAGCACATCCTGCAGCATGCCAGCGCGGCGCGGCCCAAGCTGATCGTCGCCGACTCGGTGCAGACCCTGTGGACCGAGGC
GCTGACCGCCGCGCCCGGTTCGGTCAGCCAGGTGCGCGAGAGCGCGGCACGGCTGGTGCGCTATGCCAAGGAGACCGGCA
CCGCGGTGTTCCTGGTCGGCCACGTCACCAAGGAAGGCGGCATCGCCGGCCCGCGCGTACTCGAGCACATGGTCGATGCG
GTGCTGTACTTCGAGGGCGAGAGCGGCAGCCGCTTCCGCCTGTTGCGCGCGTTCAAGAACCGCTTCGGCGCGGTCAACGA
ACTGGGCGTGTTCGCGATGGGCGAGAAGGGGCTGAAGGAAGTCTCCAACCCGTCGGCGATCTTCCTCTCCGGCGGCAGCG
CGCACCAGCCCGGCAGTTGCGTGATGGTCACCCGCGAGGGCACGCGGCCGCTGATGGTGGAGGTGCAGGCGCTGGTCGAT
GCCTCGCCGCTGTCCAATCCGCGGCGCGTGGCGGTGGGACTGGAGCAGAACCGGCTGGCGATGCTGCTGGCGGTGCTGCA
CCGCCACGGCGGCATCGTGGTCGGCGACCAGGACGTGTTCGTCAACGTGGTCGGCGGCATCCGTGTGCAGGAGACCGCGG
CCGACCTGCCGGTGCTGCTGGCGGTGCTGTCGTCGCTGCGCGACCGGCCGCTGGCGGAGAAGACCATCGCCTTCGGCGAG
GTCGGCCTGTCCGGTGAGATCCGCCCGGTGCCCAACGGCGAGGACCGGCTGCGCGAGGCGGCCACGCACGGCTTCAAGCG
CGCCATCGTGCCCAAGGCCAATGCGCCCAAGACCGGCACGGTCAAGGGCATGGAGGTGATCGCGGTGGAGCGCCTGGCGC
AAGCGTTGGAGGCGGCGAGCGAGTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(350-434)

AAA domain (AAA_25)

(88-226)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.696

99.783

0.486
  radA Streptococcus mitis SK321

43.355

99.566

0.432
  radA Streptococcus pneumoniae D39

42.888

99.132

0.425
  radA Streptococcus pneumoniae TIGR4

42.888

99.132

0.425
  radA Streptococcus mitis NCTC 12261

42.888

99.132

0.425
  radA Streptococcus pneumoniae R6

42.888

99.132

0.425
  radA Streptococcus pneumoniae Rx1

42.888

99.132

0.425