Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   UTV16_RS01965 Genome accession   NZ_CP141591
Coordinates   421534..422001 (-) Length   155 a.a.
NCBI ID   WP_000340170.1    Uniprot ID   -
Organism   Escherichia coli strain W24     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 416534..427001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UTV16_RS01940 (UTV16_01940) rpsG 416675..417145 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  UTV16_RS01945 (UTV16_01945) fusA 417242..419356 (+) 2115 WP_000124700.1 elongation factor G -
  UTV16_RS01950 (UTV16_01950) tuf 419427..420611 (+) 1185 WP_000031783.1 elongation factor Tu -
  UTV16_RS01955 (UTV16_01955) bfd 420794..420988 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  UTV16_RS01960 (UTV16_01960) bfr 421061..421537 (+) 477 WP_000675515.1 bacterioferritin -
  UTV16_RS01965 (UTV16_01965) pilD 421534..422001 (-) 468 WP_000340170.1 prepilin peptidase Machinery gene
  UTV16_RS01970 (UTV16_01970) rpsJ 422380..422691 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  UTV16_RS01975 (UTV16_01975) rplC 422724..423353 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  UTV16_RS01980 (UTV16_01980) rplD 423364..423969 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  UTV16_RS01985 (UTV16_01985) rplW 423966..424268 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  UTV16_RS01990 (UTV16_01990) rplB 424286..425107 (+) 822 WP_000301864.1 50S ribosomal protein L2 -
  UTV16_RS01995 (UTV16_01995) rpsS 425124..425402 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  UTV16_RS02000 (UTV16_02000) rplV 425417..425749 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  UTV16_RS02005 (UTV16_02005) rpsC 425767..426468 (+) 702 WP_000529945.1 30S ribosomal protein S3 -
  UTV16_RS02010 (UTV16_02010) rplP 426481..426891 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16934.09 Da        Isoelectric Point: 8.1296

>NTDB_id=837071 UTV16_RS01965 WP_000340170.1 421534..422001(-) (pilD) [Escherichia coli strain W24]
MDATLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWPFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=837071 UTV16_RS01965 WP_000340170.1 421534..422001(-) (pilD) [Escherichia coli strain W24]
ATGGACGCTACCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGCCCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361
  pilD Neisseria gonorrhoeae MS11

38.095

94.839

0.361