Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   QNI11_RS13570 Genome accession   NZ_CP126145
Coordinates   2788323..2788994 (+) Length   223 a.a.
NCBI ID   WP_283980532.1    Uniprot ID   -
Organism   Sagittula sp. MA-2     
Function   regulate competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2777846..2788994 2788323..2788994 within 0


Gene organization within MGE regions


Location: 2777846..2788994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNI11_RS13510 (QNI11_13510) - 2777846..2778771 (+) 926 Protein_2674 IS5 family transposase -
  QNI11_RS13515 (QNI11_13515) - 2778881..2779792 (-) 912 WP_283980522.1 SDR family oxidoreductase -
  QNI11_RS13520 (QNI11_13520) - 2779804..2780541 (-) 738 WP_283980523.1 SDR family oxidoreductase -
  QNI11_RS13525 (QNI11_13525) - 2780649..2781548 (+) 900 WP_283980524.1 LysR family transcriptional regulator -
  QNI11_RS13530 (QNI11_13530) - 2781843..2782157 (-) 315 WP_283980525.1 Atu4866 domain-containing protein -
  QNI11_RS13535 (QNI11_13535) - 2782221..2782727 (-) 507 WP_283980526.1 nuclear transport factor 2 family protein -
  QNI11_RS13540 (QNI11_13540) - 2782776..2783498 (-) 723 WP_283980527.1 SDR family oxidoreductase -
  QNI11_RS13545 (QNI11_13545) - 2783614..2784543 (+) 930 WP_283980528.1 LysR family transcriptional regulator -
  QNI11_RS13550 (QNI11_13550) - 2784603..2785520 (-) 918 WP_283980529.1 LysR family transcriptional regulator -
  QNI11_RS13555 (QNI11_13555) - 2785644..2786630 (+) 987 WP_283980530.1 MBL fold metallo-hydrolase -
  QNI11_RS13560 (QNI11_13560) - 2786738..2787103 (-) 366 WP_283980531.1 DUF1330 domain-containing protein -
  QNI11_RS13565 (QNI11_13565) - 2787246..2788106 (-) 861 Protein_2685 SDR family oxidoreductase -
  QNI11_RS13570 (QNI11_13570) rcrQ 2788323..2788994 (+) 672 WP_283980532.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 24581.00 Da        Isoelectric Point: 7.2492

>NTDB_id=836983 QNI11_RS13570 WP_283980532.1 2788323..2788994(+) (rcrQ) [Sagittula sp. MA-2]
MAPATECSKLGKTCLFLHSGIARLGAAQDHRIPPAHGHVGHILRLDGADIAGMSRRELRRAMAMVLQDTWLFTGTVHDNI
AYGRTNVSREQVIAAAKRCHVDDFVRTLSDGYDTVLENGGGGLSQGQRQLMTIARAFLLDAPILILDEATSSVDTRTEMQ
IQKAMAELRQGRTSFVIAHRLSTIRDADMIVYMENGNVRETGTHDQLMELKGGYWQLQNGAHT

Nucleotide


Download         Length: 672 bp        

>NTDB_id=836983 QNI11_RS13570 WP_283980532.1 2788323..2788994(+) (rcrQ) [Sagittula sp. MA-2]
GTGGCGCCTGCGACTGAATGCTCAAAGCTCGGTAAAACTTGCCTATTCCTGCATTCAGGAATTGCCCGGCTCGGTGCAGC
GCAGGATCATCGCATCCCACCCGCTCATGGCCACGTCGGCCACATACTCCGGCTCGATGGCGCAGATATCGCAGGGATGT
CTCGCAGGGAATTGCGGCGTGCCATGGCGATGGTGTTGCAGGACACATGGCTTTTCACCGGCACGGTCCATGACAATATT
GCCTACGGGCGCACAAATGTCAGCCGAGAGCAGGTCATCGCGGCCGCCAAACGCTGTCATGTGGATGACTTCGTACGCAC
GCTTTCGGACGGCTATGACACGGTTCTCGAGAATGGCGGCGGCGGTCTGTCACAGGGGCAGCGTCAGCTCATGACGATTG
CGCGGGCTTTTCTGCTCGATGCCCCGATCCTCATCCTCGACGAAGCCACAAGCTCGGTCGATACCCGGACGGAAATGCAA
ATCCAAAAGGCCATGGCAGAGTTGCGCCAGGGCCGGACAAGCTTTGTCATCGCACATCGTCTGTCGACCATCCGCGATGC
GGATATGATCGTCTATATGGAAAACGGAAATGTGCGCGAAACCGGCACGCATGACCAGCTCATGGAATTGAAAGGCGGGT
ATTGGCAACTGCAAAATGGGGCGCATACTTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(37-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

59.341

81.614

0.484