Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   QNN06_RS23315 Genome accession   NZ_CP126144
Coordinates   4765565..4767253 (-) Length   562 a.a.
NCBI ID   WP_284036021.1    Uniprot ID   -
Organism   Neobacillus sp. 114     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4760565..4772253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNN06_RS23290 - 4761788..4762036 (+) 249 WP_213120249.1 DUF2627 domain-containing protein -
  QNN06_RS23295 - 4762049..4762777 (-) 729 WP_213120248.1 glycerophosphodiester phosphodiesterase -
  QNN06_RS23300 - 4762814..4762954 (+) 141 WP_213120247.1 YycC family protein -
  QNN06_RS23305 spo0A 4763087..4763881 (-) 795 WP_213120246.1 sporulation transcription factor Spo0A -
  QNN06_RS23310 spoIVB 4764153..4765442 (-) 1290 WP_284036020.1 SpoIVB peptidase -
  QNN06_RS23315 recN 4765565..4767253 (-) 1689 WP_284036021.1 DNA repair protein RecN Machinery gene
  QNN06_RS23320 argR 4767270..4767719 (-) 450 WP_213120243.1 transcriptional regulator ArgR -
  QNN06_RS23325 - 4767861..4768691 (-) 831 WP_284036022.1 TlyA family RNA methyltransferase -
  QNN06_RS23330 dxs 4768695..4770590 (-) 1896 WP_213120241.1 1-deoxy-D-xylulose-5-phosphate synthase -
  QNN06_RS23335 - 4770749..4771642 (-) 894 WP_284036023.1 farnesyl diphosphate synthase -
  QNN06_RS23340 - 4771645..4771878 (-) 234 WP_213120240.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 562 a.a.        Molecular weight: 63631.54 Da        Isoelectric Point: 5.0597

>NTDB_id=836956 QNN06_RS23315 WP_284036021.1 4765565..4767253(-) (recN) [Neobacillus sp. 114]
MLSELSIKNFAIIEALTISFEKGLTVLTGETGAGKSIIIDAIHLLAGGRGSAEFVRHGEDKAEIEGLFQIDEPQHPVYLK
ALEFGIDIEEGMVILRRDISRSGKSVCRVNGKLVTISTLREIGSALVDIHGQHEHQELMDETRHLPLLDQFGAEEIAASL
EEYQEVFARFEKSRQKLKALSENDQQMAHRLDLILFQLNEIQKADLKLHEDEELAEEKRKLANFEKVYEAFQLSYSALNG
EQKGLDWIGMAMGHLEDAGSLDSSYKELYELVSNCYYQLEDAARSLRNEMDDMEFDPQRLHEIEDRLNEINQLKRKYGRS
IKEILEYAAKIEEEIETLQNKETHISELEKELASINKDLILEARELSALRQKWAKNLTGLIHTELKELYMEKTVFEIRIE
TESQHFSKTGIDHVQFYISTNPGEPLKPLSKVASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGVSGRVAQAIAEKIY
KVSVNSQVLCISHLPQVAAMADTHLYISKLIKGGRTTTSVKPLNEQEKIKEVGRMISGTEITELTKQHAKELLQMAEENK
KI

Nucleotide


Download         Length: 1689 bp        

>NTDB_id=836956 QNN06_RS23315 WP_284036021.1 4765565..4767253(-) (recN) [Neobacillus sp. 114]
TTGTTGTCAGAACTATCGATAAAAAATTTCGCGATTATCGAAGCCTTAACGATTTCTTTTGAAAAAGGTTTAACTGTTTT
AACGGGGGAAACGGGCGCGGGAAAATCGATTATTATTGATGCCATTCATTTGCTAGCTGGAGGTAGAGGGTCGGCTGAAT
TTGTCAGACATGGCGAAGATAAGGCAGAAATTGAAGGTTTGTTTCAAATTGACGAACCTCAGCACCCGGTCTACTTAAAG
GCTCTTGAATTTGGCATTGATATAGAGGAAGGTATGGTCATATTGCGGCGGGATATTTCCCGCTCCGGCAAAAGCGTCTG
CCGTGTAAACGGGAAGCTCGTAACCATTTCAACACTAAGGGAAATCGGTTCCGCTCTTGTTGATATCCATGGCCAGCATG
AACATCAGGAACTGATGGATGAAACAAGGCATCTTCCGCTTCTCGACCAATTTGGCGCCGAAGAAATCGCAGCTTCTTTA
GAAGAGTATCAGGAGGTTTTTGCACGCTTTGAGAAGTCGCGCCAGAAACTTAAAGCGTTAAGTGAAAACGACCAGCAGAT
GGCCCATCGTCTAGATTTGATTCTTTTTCAGTTAAACGAAATTCAAAAAGCCGATTTAAAGCTCCATGAAGATGAAGAAT
TAGCTGAGGAAAAAAGGAAATTGGCGAATTTTGAGAAGGTCTATGAGGCTTTTCAATTAAGTTATTCCGCATTAAATGGC
GAGCAAAAAGGACTGGACTGGATTGGCATGGCCATGGGCCATCTCGAGGATGCCGGTTCCCTTGATAGCAGCTATAAAGA
ATTATATGAACTAGTGTCCAATTGCTATTATCAGCTGGAAGATGCGGCCCGTTCCTTAAGAAATGAAATGGATGACATGG
AATTTGATCCGCAAAGATTACATGAAATCGAAGACCGCCTGAATGAAATCAACCAATTAAAACGAAAATACGGCAGAAGC
ATTAAGGAAATATTAGAATATGCGGCAAAAATAGAAGAAGAAATTGAAACACTGCAAAATAAAGAAACGCATATCAGTGA
ATTGGAAAAAGAATTGGCCTCCATCAATAAGGATTTAATTCTTGAGGCAAGGGAATTATCTGCCCTTAGGCAAAAGTGGG
CTAAGAACCTCACCGGTCTTATACATACAGAGCTAAAGGAATTGTATATGGAAAAAACTGTTTTTGAAATACGAATCGAA
ACAGAGTCCCAGCATTTTTCAAAAACAGGAATAGACCATGTTCAGTTTTATATTTCCACCAACCCTGGCGAACCGCTAAA
GCCATTGTCAAAAGTGGCATCCGGCGGGGAACTATCACGTATCATGCTGGCGTTAAAAAGTATTTTTTCCAAACATCAGG
GAGTTACTTCGATTATCTTTGATGAAGTTGATACGGGTGTAAGCGGAAGGGTTGCCCAAGCGATTGCTGAAAAGATTTAT
AAAGTATCAGTAAATTCACAGGTTTTATGTATTTCTCACCTGCCGCAGGTTGCAGCGATGGCGGATACTCACCTATATAT
ATCGAAACTGATAAAAGGTGGAAGAACGACGACCTCGGTTAAGCCACTAAATGAACAAGAAAAAATAAAAGAGGTTGGCC
GCATGATTTCGGGGACCGAAATTACGGAGTTAACGAAGCAACATGCGAAAGAATTATTGCAAATGGCAGAAGAAAATAAA
AAAATTTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

62.544

100

0.639