Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   QNN06_RS09425 Genome accession   NZ_CP126144
Coordinates   1885659..1887482 (+) Length   607 a.a.
NCBI ID   WP_213116602.1    Uniprot ID   A0A942U604
Organism   Neobacillus sp. 114     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1880659..1892482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNN06_RS09405 spxA 1881162..1881557 (+) 396 WP_042455300.1 transcriptional regulator SpxA -
  QNN06_RS09410 mecA 1881905..1882576 (+) 672 WP_213116604.1 adaptor protein MecA -
  QNN06_RS09415 cls 1882734..1884245 (+) 1512 WP_284037915.1 cardiolipin synthase -
  QNN06_RS09420 - 1884351..1885532 (+) 1182 WP_213116603.1 competence protein CoiA family protein -
  QNN06_RS09425 pepF 1885659..1887482 (+) 1824 WP_213116602.1 oligoendopeptidase F Regulator
  QNN06_RS09430 - 1888030..1888896 (-) 867 WP_213116601.1 ClpXP adapter SpxH family protein -
  QNN06_RS09435 - 1888893..1889300 (-) 408 WP_213116600.1 globin -
  QNN06_RS09440 - 1889435..1890013 (-) 579 WP_213116599.1 CYTH domain-containing protein -
  QNN06_RS09445 - 1890134..1890493 (+) 360 WP_213116598.1 hypothetical protein -
  QNN06_RS09450 - 1890517..1891155 (+) 639 WP_213116597.1 GTP pyrophosphokinase family protein -
  QNN06_RS09455 - 1891198..1891992 (+) 795 WP_213116596.1 NAD kinase -

Sequence

Protein


Download         Length: 607 a.a.        Molecular weight: 69971.56 Da        Isoelectric Point: 4.9016

>NTDB_id=836944 QNN06_RS09425 WP_213116602.1 1885659..1887482(+) (pepF) [Neobacillus sp. 114]
MTNETAVKSLPARSEIPVEDTWKLEDIFASDEGWEKEFQEVKAQIPGIKQFEGKLGESAETLYKALQFQDQLFERIGKLY
TYSHMRYDQDTTNSFYQGLDDRMKNLYSQAASQFAFIVPEILAIDESKVTGFLSEKTELKLYEHSLEEINLQRPHVLSAE
QEALLAEASEVMNASSNTFGMLNNADLEFPSIKDENGNEVEITHGRYIRFLESEDQRVRHDAFKGVYQTYGQFKNTFAST
LGGNVKKDNFNARVRNYDSARHSALAANNIPETVYDNLVNTVNENLHLLHRYVKLRKQVLGVQELHMYDLYTPLVKDVKM
EIKYEEAKDLVIKGLAPLGDEYAQILKEGFENRWVDVHENKGKRSGAYSSGAYGTHPYILMNWQDNVNNLFTLAHEFGHS
VHSFYTRKNQPFPYGDYSIFVAEVASTCNEALLNDYLLKTIDDEQKRIYLLNHYLEGFRGTVFRQTMFAEFEHLIHQMAQ
NNEALTAETLTKTYYELNKKYFGEEDIVIDEEIGLEWTRIPHFYYNYYVYQYATGFSAATALSKQILEEGKPAVKRYIEF
LSAGSSDYPIEVLKKAGVDMTSSEPIKDACKVFEEKLGELEQLLLKK

Nucleotide


Download         Length: 1824 bp        

>NTDB_id=836944 QNN06_RS09425 WP_213116602.1 1885659..1887482(+) (pepF) [Neobacillus sp. 114]
ATGACAAATGAAACGGCTGTAAAGTCACTCCCGGCAAGAAGTGAAATTCCAGTTGAAGATACGTGGAAGCTGGAGGATAT
TTTTGCAAGTGATGAGGGATGGGAAAAAGAATTCCAAGAGGTGAAGGCACAAATTCCGGGAATTAAGCAGTTCGAAGGAA
AATTGGGAGAAAGTGCAGAGACGCTTTATAAAGCCCTTCAATTTCAGGACCAGCTTTTTGAAAGAATCGGCAAGCTCTAT
ACATATTCACATATGAGATACGACCAAGATACGACAAACTCTTTTTATCAGGGCTTGGATGATCGAATGAAGAATCTTTA
TTCTCAAGCAGCGAGCCAATTTGCCTTTATTGTTCCGGAAATTCTAGCAATTGACGAAAGTAAAGTAACTGGTTTTTTAA
GTGAAAAAACGGAATTAAAGCTATATGAACATTCTCTTGAAGAAATTAATTTGCAACGGCCGCATGTATTGAGTGCGGAG
CAGGAAGCTCTGCTTGCTGAGGCGAGTGAAGTAATGAATGCGTCTAGTAATACATTCGGCATGCTGAATAATGCCGATTT
GGAGTTCCCGTCCATTAAGGATGAAAATGGAAACGAGGTTGAAATTACTCATGGCCGTTATATCCGTTTCCTTGAAAGTG
AAGACCAGAGGGTTAGGCATGACGCTTTTAAAGGGGTATATCAAACCTATGGCCAGTTTAAAAATACATTCGCAAGTACC
TTAGGCGGTAATGTAAAAAAGGATAATTTTAATGCTAGGGTCCGGAACTATGACTCAGCAAGACATTCAGCCCTTGCTGC
TAATAATATTCCTGAAACGGTCTATGATAACTTAGTGAATACCGTTAATGAGAATCTGCATCTGCTGCACCGTTATGTAA
AGCTCCGCAAACAAGTATTAGGGGTTCAGGAGCTTCATATGTATGATTTGTACACACCACTAGTTAAAGATGTGAAAATG
GAAATTAAGTATGAAGAAGCAAAAGACCTTGTTATAAAAGGGCTAGCTCCGTTAGGTGATGAGTATGCCCAGATTCTAAA
AGAAGGCTTTGAAAACCGCTGGGTGGATGTCCATGAGAATAAGGGCAAGCGAAGCGGGGCTTACTCCTCAGGAGCATACG
GAACGCATCCATATATCCTGATGAACTGGCAGGATAACGTAAACAATTTATTCACCTTAGCACATGAGTTTGGCCACTCT
GTACACAGCTTCTATACGCGGAAGAATCAGCCGTTCCCATATGGGGACTATTCGATTTTTGTTGCCGAGGTGGCTTCTAC
CTGCAATGAGGCGCTGCTGAACGACTATTTGTTAAAAACAATTGATGATGAACAAAAGAGGATTTATCTGTTGAATCATT
ATTTGGAAGGCTTTAGAGGGACGGTATTCCGTCAGACGATGTTTGCTGAATTCGAGCATTTAATCCACCAGATGGCGCAG
AATAATGAGGCATTAACGGCTGAAACATTAACAAAAACCTATTATGAATTAAATAAAAAGTACTTCGGTGAAGAGGATAT
TGTCATTGATGAGGAAATCGGCCTTGAATGGACCCGCATCCCGCATTTCTATTACAACTATTATGTCTACCAATATGCGA
CAGGCTTCAGCGCGGCCACAGCACTAAGCAAGCAGATTTTAGAGGAAGGCAAGCCAGCAGTAAAACGGTATATTGAATTC
CTCAGTGCAGGAAGCTCCGATTATCCAATCGAAGTATTAAAGAAAGCCGGAGTGGATATGACAAGCTCTGAGCCAATCAA
GGATGCCTGCAAGGTGTTTGAAGAAAAACTAGGTGAATTAGAACAACTATTGCTAAAAAAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-590)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

48.993

98.188

0.481