Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   QZD84_RS07455 Genome accession   NZ_CP141290
Coordinates   1593499..1594479 (-) Length   326 a.a.
NCBI ID   WP_029559229.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain BM26A     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1588499..1599479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZD84_RS07445 - 1588999..1591443 (+) 2445 WP_308386162.1 collagenase -
  QZD84_RS07450 - 1591693..1593489 (-) 1797 WP_308386161.1 aminopeptidase P family protein -
  QZD84_RS07455 amiE 1593499..1594479 (-) 981 WP_029559229.1 oligopeptide/dipeptide ABC transporter ATP-binding protein Regulator
  QZD84_RS07460 - 1594489..1595472 (-) 984 WP_023623929.1 oligopeptide/dipeptide ABC transporter ATP-binding protein -
  QZD84_RS07465 - 1595483..1596415 (-) 933 WP_025626956.1 ABC transporter permease subunit -
  QZD84_RS07470 oppB 1596425..1597345 (-) 921 WP_005454907.1 oligopeptide ABC transporter permease OppB -
  QZD84_RS07475 - 1597512..1599122 (-) 1611 WP_025501779.1 peptide ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 36420.23 Da        Isoelectric Point: 8.3113

>NTDB_id=836937 QZD84_RS07455 WP_029559229.1 1593499..1594479(-) (amiE) [Vibrio parahaemolyticus strain BM26A]
MNQKEVLLSARELQVHFPVSRHLIPSRRKIVQAVNGIDLDVYRGETLGIVGESGCGKSTLARALLRLVEPTHGKLTWKGE
DMRGFSKNKLARRRQEFQMIFQDPSASLNPRLTISECIAEPLLTHQPQLKRAEVEKRVIAMMDKVGLLASQRNRYPHEFS
GGQCQRVGIARALILNPDLVVCDEPVSALDVSIQAQVINLLDDLKQEMGLTLVMIAHDLSVVRHISDRVMVMYLGKPMEV
GRYDQVFDDAQHPYTKALLSAVPIANPQLARNRDIQLLPGDLPSPLNPPSGCVFRTRCPEATELCGQQSPVKTGTEQHHI
YCSNMI

Nucleotide


Download         Length: 981 bp        

>NTDB_id=836937 QZD84_RS07455 WP_029559229.1 1593499..1594479(-) (amiE) [Vibrio parahaemolyticus strain BM26A]
ATGAATCAGAAAGAAGTGTTATTGTCCGCTCGCGAACTGCAAGTGCATTTTCCTGTTTCGCGACACCTCATTCCGAGCCG
AAGAAAGATCGTACAAGCCGTCAACGGCATCGATTTGGATGTTTATCGAGGCGAAACGCTCGGCATTGTTGGCGAATCAG
GCTGCGGAAAATCCACCTTAGCACGTGCTCTGCTGCGCTTAGTTGAACCCACGCACGGCAAGCTCACTTGGAAAGGTGAA
GACATGCGTGGCTTCAGCAAAAACAAGTTAGCACGTCGTCGCCAAGAATTTCAGATGATATTCCAAGACCCATCGGCGAG
CCTCAATCCGAGATTGACGATTTCAGAATGTATCGCAGAGCCGTTACTCACACACCAACCTCAACTCAAACGCGCCGAAG
TCGAAAAACGCGTCATTGCGATGATGGACAAAGTGGGTCTGTTGGCAAGCCAACGTAACCGATATCCGCATGAGTTTTCT
GGCGGTCAGTGCCAACGTGTTGGCATCGCGCGCGCCTTAATCCTCAATCCGGACTTAGTGGTGTGTGATGAACCCGTCAG
TGCATTGGATGTCTCGATTCAAGCGCAGGTCATTAATTTGCTCGACGACCTTAAACAAGAAATGGGACTGACACTGGTGA
TGATCGCTCATGACCTAAGCGTTGTGCGCCATATCAGCGACCGAGTGATGGTGATGTACCTTGGCAAACCAATGGAAGTG
GGACGCTACGACCAAGTGTTCGACGATGCTCAGCATCCCTACACAAAAGCATTGCTTTCTGCTGTACCGATTGCCAATCC
GCAACTTGCACGCAACCGCGACATCCAATTGTTGCCCGGAGACCTCCCTTCTCCGCTCAACCCACCCAGCGGTTGTGTTT
TTAGAACCCGATGCCCAGAAGCTACGGAACTATGTGGGCAGCAAAGCCCAGTCAAAACAGGCACTGAGCAACATCATATT
TACTGTTCAAACATGATTTAG

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(238-305)

ABC transporter (ABC_tran)

(35-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

40.193

95.399

0.383
  amiE Streptococcus thermophilus LMD-9

40.193

95.399

0.383
  amiF Streptococcus salivarius strain HSISS4

45.091

84.356

0.38
  amiF Streptococcus thermophilus LMG 18311

45.055

83.742

0.377
  amiF Streptococcus thermophilus LMD-9

45.055

83.742

0.377
  amiE Streptococcus salivarius strain HSISS4

39.423

95.706

0.377
  oppD Streptococcus mutans UA159

38.339

96.012

0.368