Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QNN06_RS00535 Genome accession   NZ_CP126144
Coordinates   103349..104731 (+) Length   460 a.a.
NCBI ID   WP_213121109.1    Uniprot ID   A0A942UCL6
Organism   Neobacillus sp. 114     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 98349..109731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNN06_RS00515 - 98675..99136 (+) 462 WP_213121113.1 CtsR family transcriptional regulator -
  QNN06_RS00520 - 99157..99705 (+) 549 WP_213121112.1 UvrB/UvrC motif-containing protein -
  QNN06_RS00525 - 99708..100790 (+) 1083 WP_213121111.1 protein arginine kinase -
  QNN06_RS00530 clpC 100795..103239 (+) 2445 WP_213121110.1 ATP-dependent Clp protease ATP-binding subunit -
  QNN06_RS00535 radA 103349..104731 (+) 1383 WP_213121109.1 DNA repair protein RadA Machinery gene
  QNN06_RS00540 disA 104735..105808 (+) 1074 WP_213121108.1 DNA integrity scanning diadenylate cyclase DisA -
  QNN06_RS00545 - 106003..107091 (+) 1089 WP_213121107.1 PIN/TRAM domain-containing protein -
  QNN06_RS00550 ispD 107110..107808 (+) 699 WP_213121106.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  QNN06_RS00555 ispF 107904..108386 (+) 483 WP_284036743.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49999.60 Da        Isoelectric Point: 7.7189

>NTDB_id=836926 QNN06_RS00535 WP_213121109.1 103349..104731(+) (radA) [Neobacillus sp. 114]
MVKRKTKFMCQDCGYESPKWMGKCPGCGGWNRMVEEVEVTGTQRRGAFAHSQGGSGILSKPVPITSIETVSEPRIHTDLK
ELNRVLGGGVVKGSLVLIGGDPGIGKSTLLLQVSSQLAKKDHQVLYISGEESLRQTKLRAERLNIASPNLMVYAETNLEE
INRTIESTNPSFVIIDSIQTVYHPEVTSAPGSVSQVRECTAELMRIGKTKGIAIFIVGHVTKEGSIAGPRLLEHMVDTVL
YFEGERHHTYRILRAVKNRFGSTNEMGIFEMKEFGLEEVENPSEIFLEERSRGAAGSTVVASMEGTRPVLVEIQALISPT
SFGNPRRMATGIDHNRVPLLMAVLEKRVGMLLANQDAYLKVAGGVKLDEPAIDLAIAVSIASSFRDKPTRPTDCIIGEVG
LTGEVRRVSRIEQRVQEAAKMGFERVILPANNLSGWNGPIGVELIGVSSVSEALKVALGG

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=836926 QNN06_RS00535 WP_213121109.1 103349..104731(+) (radA) [Neobacillus sp. 114]
ATGGTAAAGCGAAAAACAAAATTCATGTGTCAGGACTGCGGATATGAGTCACCAAAATGGATGGGAAAATGCCCAGGGTG
TGGCGGCTGGAATCGAATGGTCGAAGAAGTAGAGGTTACCGGGACACAAAGACGGGGAGCATTTGCCCATTCTCAGGGCG
GTTCAGGCATTCTTTCTAAACCAGTTCCGATCACTTCGATTGAAACGGTCAGCGAGCCGAGAATCCATACTGATTTAAAG
GAATTGAACCGCGTTCTTGGCGGCGGAGTCGTTAAGGGGTCATTGGTGTTAATTGGAGGCGACCCGGGCATCGGAAAATC
AACGCTCCTTCTGCAAGTATCTTCACAGCTAGCAAAAAAAGATCATCAGGTATTGTACATATCCGGTGAGGAATCCTTAC
GGCAAACCAAGCTTCGGGCGGAACGATTGAACATCGCCTCGCCAAATTTAATGGTATATGCGGAGACAAACCTTGAGGAA
ATTAACAGGACCATTGAAAGCACTAATCCAAGCTTTGTCATTATCGATTCCATCCAGACGGTTTACCACCCGGAGGTTAC
CTCAGCACCCGGTAGTGTTTCTCAGGTTCGCGAATGTACGGCCGAATTAATGAGAATTGGCAAAACGAAAGGGATTGCTA
TCTTTATTGTCGGGCATGTTACAAAAGAAGGGTCGATTGCCGGTCCTAGGCTGCTCGAGCATATGGTGGATACGGTCCTT
TATTTTGAGGGTGAAAGACACCATACCTACCGAATTTTACGTGCTGTAAAAAACCGCTTTGGATCTACAAATGAAATGGG
AATATTTGAAATGAAGGAATTTGGTCTTGAAGAAGTCGAAAATCCATCGGAAATATTTTTGGAGGAGCGCTCTAGAGGTG
CGGCAGGATCGACTGTTGTCGCTTCGATGGAAGGAACCCGCCCTGTTCTTGTGGAAATCCAAGCACTTATTTCGCCCACC
AGCTTTGGGAACCCGAGAAGGATGGCAACAGGGATTGACCACAACCGGGTACCGCTCTTAATGGCTGTTCTAGAGAAGCG
GGTCGGAATGCTTCTCGCCAATCAAGATGCCTATTTAAAGGTAGCCGGCGGAGTGAAATTGGATGAACCGGCAATTGATT
TGGCGATTGCCGTAAGCATTGCTTCGAGTTTTAGGGACAAACCAACAAGGCCGACAGATTGTATTATTGGGGAGGTCGGC
TTAACGGGAGAAGTCAGACGAGTTTCAAGAATCGAGCAGCGTGTTCAGGAGGCTGCCAAAATGGGATTTGAGCGGGTTAT
CCTGCCGGCTAATAATCTTAGTGGCTGGAATGGGCCAATAGGTGTAGAACTCATCGGTGTTTCGTCGGTCAGCGAGGCGC
TGAAGGTGGCTTTGGGAGGGTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(368-432)

AAA domain (AAA_25)

(68-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

76.79

100

0.77
  radA Streptococcus mitis SK321

61.758

98.913

0.611
  radA Streptococcus mitis NCTC 12261

61.758

98.913

0.611
  radA Streptococcus pneumoniae Rx1

61.758

98.913

0.611
  radA Streptococcus pneumoniae D39

61.758

98.913

0.611
  radA Streptococcus pneumoniae R6

61.758

98.913

0.611
  radA Streptococcus pneumoniae TIGR4

61.758

98.913

0.611