Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   QZD84_RS01745 Genome accession   NZ_CP141290
Coordinates   360717..361574 (+) Length   285 a.a.
NCBI ID   WP_005496771.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain BM26A     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 355717..366574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZD84_RS01730 - 356775..357800 (+) 1026 WP_005458995.1 ABC transporter permease subunit -
  QZD84_RS01735 - 357802..358842 (+) 1041 WP_308386270.1 ABC transporter permease subunit -
  QZD84_RS01740 - 358881..360707 (+) 1827 WP_031856023.1 extracellular solute-binding protein -
  QZD84_RS01745 amiE 360717..361574 (+) 858 WP_005496771.1 ABC transporter ATP-binding protein Regulator
  QZD84_RS01750 - 361611..362451 (+) 841 Protein_325 ABC transporter ATP-binding protein -
  QZD84_RS01755 - 362581..363006 (+) 426 WP_031856022.1 phosphate-starvation-inducible PsiE family protein -
  QZD84_RS01760 - 363582..365429 (+) 1848 WP_085577011.1 AAA family ATPase -
  QZD84_RS01765 - 365676..366230 (+) 555 WP_338429098.1 hypothetical protein -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 31594.65 Da        Isoelectric Point: 4.4929

>NTDB_id=836907 QZD84_RS01745 WP_005496771.1 360717..361574(+) (amiE) [Vibrio parahaemolyticus strain BM26A]
MENDVILSVKDLEVEFITDDGPVKVLHGVNFDVRAGRTLGLVGESGSGKSVTSMSIMGLLPKPYGNIVNGEVNYRGTNLV
SLPAEEMYAMRGDRISIIFQDPMTALNPVHTIGRQLCEVLELHRPELGKKERESYAVEMLAKVKIPMPEKRLNEYPHNLS
GGMRQRVMIAMALACKPDILICDEPTTALDVTVQASILELMNELQEETGMAMIFITHDLGVVAEVCDDVAVMYGGRIVEK
AEIFELFDNPQHPYTERLMGLMPSLDNEPKQMIDIKPIDASMFAS

Nucleotide


Download         Length: 858 bp        

>NTDB_id=836907 QZD84_RS01745 WP_005496771.1 360717..361574(+) (amiE) [Vibrio parahaemolyticus strain BM26A]
ATGGAAAACGATGTAATTTTGAGTGTAAAAGACCTCGAAGTGGAATTCATCACGGATGATGGCCCGGTAAAAGTACTCCA
TGGCGTGAACTTTGATGTTCGCGCAGGACGAACGCTCGGTCTCGTTGGTGAGTCTGGCAGTGGTAAGAGCGTGACCTCTA
TGTCCATCATGGGACTGTTGCCAAAGCCTTACGGAAATATTGTCAATGGTGAGGTTAACTATCGAGGTACCAATCTGGTG
TCGCTACCAGCGGAAGAAATGTACGCCATGCGCGGCGACCGCATTTCGATCATTTTCCAAGACCCAATGACGGCGTTGAA
TCCAGTGCATACCATTGGCCGCCAACTGTGCGAAGTGTTGGAATTACACCGTCCTGAGCTAGGTAAAAAAGAGCGCGAAT
CCTACGCGGTAGAAATGCTGGCTAAAGTGAAAATTCCAATGCCAGAAAAGCGCCTCAACGAATACCCACACAACCTATCT
GGTGGTATGCGCCAGCGCGTGATGATCGCAATGGCACTCGCATGTAAACCAGATATCTTGATTTGTGATGAGCCAACGAC
AGCACTGGATGTAACGGTACAGGCGTCTATCCTTGAACTAATGAATGAACTTCAAGAAGAAACGGGCATGGCAATGATCT
TCATTACTCATGATTTAGGCGTAGTCGCTGAAGTGTGTGATGACGTTGCGGTAATGTATGGTGGTCGTATTGTCGAAAAA
GCGGAGATTTTTGAGCTGTTTGACAATCCGCAGCACCCTTACACGGAACGTTTGATGGGCTTAATGCCAAGCTTGGACAA
CGAACCTAAGCAGATGATTGATATCAAACCAATCGATGCCAGCATGTTTGCTAGCTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(26-186)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(238-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

48.582

98.947

0.481
  amiE Streptococcus thermophilus LMD-9

48.582

98.947

0.481
  amiE Streptococcus salivarius strain HSISS4

48.582

98.947

0.481
  oppD Streptococcus mutans UA159

50.752

93.333

0.474
  amiF Streptococcus salivarius strain HSISS4

39.464

91.579

0.361