Detailed information NTG0836893

Bioinformatically predicted

Overview

• Name: recQ
• Type: Machinery gene
• Locus tag: QZD84_RS00280
• Genome accession: NZ_CP141290
• Coordinates: 52243..54078 (-)
• Length: 611 a.a.
• NCBI ID: WP_203529179.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain BM26A
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 47243..59078

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QZD84_RS00255	trxA	47506..47832 (-)	327	WP_005458583.1	thioredoxin TrxA	-
QZD84_RS00260	rhlB	47944..49256 (+)	1313	Protein_45	ATP-dependent RNA helicase RhlB	-
QZD84_RS00265	gppA	49276..50769 (+)	1494	WP_308386289.1	guanosine-5'-triphosphate,3'-diphosphate diphosphatase	-
QZD84_RS00270	-	50966..51634 (-)	669	WP_005497391.1	7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter	-
QZD84_RS00275	-	51928..52233 (-)	306	WP_005458579.1	DUF3630 family protein	-
QZD84_RS00280	recQ	52243..54078 (-)	1836	WP_203529179.1	ATP-dependent DNA helicase RecQ	Machinery gene
QZD84_RS00285	rarD	54253..55167 (+)	915	WP_005497386.1	EamA family transporter RarD	-
QZD84_RS00290	-	55242..56039 (+)	798	WP_025517956.1	AraC family transcriptional regulator	-
QZD84_RS00295	-	56131..56790 (+)	660	WP_005458574.1	LysE family translocator	-
QZD84_RS00300	ggt	56901..58661 (+)	1761	WP_140069122.1	gamma-glutamyltransferase	-

Sequence

Protein

• Length: 611 a.a.
• Molecular weight: 69253.21 Da
• Isoelectric Point: 6.8897

>NTDB_id=836893 QZD84_RS00280 WP_203529179.1 52243..54078(-) (recQ) [Vibrio parahaemolyticus strain BM26A]
MTSTLLAEQSDSPVTPQRVLEEVFGYQTFRDGQQEVIESAVEGKDSLVIMPTGGGKSLCYQIPALVRSGITLVISPLISL
MKDQVDQLKANGVAAECVNSTMSREELLSVYNRMHSGQLKLVYVSPERVLMRDFIERLENLPLAMIAVDEAHCISQWGHD
FRPEYAALGQLKQHFSHVPFMALTATADDATRRDILERLRLHEPHVHLGSFDRPNIRYNLVEKHKPISQIIRYLDTQKGN
CGIIYCGSRKKVEMVTEKLCNNHIRAAGYHAGMDADERAYVQEAFQRDDIQIVVATVAFGMGINKPNVRFVVHFDIPRNI
ESYYQETGRAGRDGLPAEAMMLYDPADISWLRRMLDEKDDGPQKQVESHKLNAMSAFAEAQTCRRQVLLNYFGEYREKPC
GNCDICLDPPKHFDATEEARKALSCVYRVNQSFGMTYVVEVLRGMQNIRVREHGHDKISTYGIGRDHSHDYWVSIFRQLI
HKGLLFQNITRNSTLQLTEEARPLLRGDVLLELAVPRLDTAARAAKSDKLTSKNYDKKLFAKLRKLRKSIADEDGLPPYV
VFSDATLIDMAEILPTSYGEMLAVSGVGQRKLEKYADPFLDLIQEHITHHG

Nucleotide

• Length: 1836 bp

>NTDB_id=836893 QZD84_RS00280 WP_203529179.1 52243..54078(-) (recQ) [Vibrio parahaemolyticus strain BM26A]
ATGACCTCAACTTTGTTAGCCGAACAATCAGACTCACCGGTAACGCCTCAACGTGTGTTGGAGGAAGTTTTCGGTTATCA
AACGTTTCGTGATGGCCAGCAAGAGGTCATCGAATCGGCGGTCGAGGGCAAAGACAGTCTGGTGATCATGCCGACAGGTG
GTGGCAAATCTCTTTGCTATCAGATACCTGCGTTGGTTCGTAGTGGCATCACCTTGGTGATTTCGCCGCTGATTTCTTTG
ATGAAAGACCAGGTCGATCAGCTCAAAGCCAACGGCGTTGCGGCAGAGTGTGTGAACTCCACCATGAGTCGTGAAGAGCT
GCTGAGTGTGTATAACCGCATGCACAGCGGTCAACTCAAATTGGTTTACGTCTCACCAGAACGCGTGTTAATGCGTGACT
TCATCGAGCGACTCGAAAACCTGCCTTTGGCGATGATTGCGGTGGATGAAGCGCACTGTATCTCGCAGTGGGGACACGAT
TTCCGTCCCGAATACGCCGCGCTGGGTCAGTTAAAGCAGCATTTTTCGCATGTGCCATTTATGGCGCTCACCGCCACTGC
GGATGACGCTACACGTCGCGACATTCTTGAACGCTTACGTTTGCATGAACCTCATGTCCACTTAGGCAGTTTTGACCGTC
CGAATATCCGCTACAACCTGGTCGAGAAGCACAAGCCGATTTCTCAGATCATTCGTTATCTCGACACCCAAAAGGGCAAT
TGCGGCATCATTTACTGTGGTAGCCGTAAGAAAGTCGAAATGGTGACGGAGAAGTTGTGCAACAACCACATCCGTGCGGC
GGGCTATCATGCAGGGATGGACGCTGATGAGCGTGCTTACGTTCAAGAGGCGTTTCAGCGTGATGACATTCAAATCGTGG
TCGCGACGGTTGCCTTTGGTATGGGCATCAACAAGCCGAACGTCCGTTTTGTGGTGCACTTTGATATTCCGCGCAATATT
GAATCCTACTACCAAGAAACGGGACGAGCAGGGCGAGATGGTTTACCTGCTGAAGCGATGATGTTGTACGACCCCGCAGA
CATCAGTTGGCTGCGCCGCATGCTGGATGAAAAAGACGATGGTCCGCAAAAGCAAGTAGAAAGCCATAAACTTAATGCGA
TGAGTGCCTTTGCGGAAGCGCAAACCTGTCGTCGTCAGGTTCTGCTCAACTACTTTGGTGAGTACCGCGAGAAGCCTTGT
GGTAACTGCGATATCTGCCTCGATCCACCCAAACATTTTGATGCGACAGAAGAAGCGCGAAAAGCGTTGTCGTGTGTTTA
CCGCGTTAACCAAAGCTTTGGTATGACCTATGTGGTTGAGGTGCTGCGTGGTATGCAAAATATCCGCGTGCGTGAACATG
GCCACGATAAGATCTCTACATACGGCATTGGCCGCGATCACAGCCATGATTACTGGGTGAGTATCTTCCGCCAGTTAATC
CACAAAGGGCTGCTGTTTCAAAACATCACCCGAAACTCGACGTTGCAATTGACCGAGGAAGCTCGACCATTATTGCGCGG
GGATGTGTTGCTCGAGCTAGCGGTTCCTCGTTTGGATACCGCAGCACGCGCTGCGAAGTCGGACAAACTGACCAGCAAAA
ACTACGATAAGAAGCTGTTTGCGAAATTACGCAAGCTGCGTAAGTCGATTGCCGATGAAGATGGCTTACCACCATACGTT
GTATTTAGTGATGCGACCTTGATTGATATGGCGGAGATTCTGCCGACGTCGTATGGCGAAATGCTGGCGGTGAGCGGGGT
AGGTCAACGTAAATTAGAAAAATATGCCGATCCATTCTTGGATCTGATTCAAGAACACATCACTCACCACGGATAA

Domains

Predicted by InterProScan.

• Helicase conserved C-terminal domain (Helicase_C) (228-333)

• DEAD/DEAH box helicase (DEAD) (31-189)

• HRDC domain (HRDC) (537-603)

• RQC domain (RQC) (409-517)

• RecQ zinc-binding (RecQ_Zn_bind) (346-407)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recQ	Bacillus subtilis subsp. subtilis str. 168	40.541	96.89	0.393