Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   QZL39_RS01720 Genome accession   NZ_CP141287
Coordinates   357069..357926 (+) Length   285 a.a.
NCBI ID   WP_021823357.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain I14B     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 352069..362926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZL39_RS01705 - 353126..354151 (+) 1026 WP_005458995.1 ABC transporter permease subunit -
  QZL39_RS01710 - 354153..355194 (+) 1042 Protein_311 ABC transporter permease subunit -
  QZL39_RS01715 - 355233..357059 (+) 1827 WP_005458972.1 extracellular solute-binding protein -
  QZL39_RS01720 amiE 357069..357926 (+) 858 WP_021823357.1 ABC transporter ATP-binding protein Regulator
  QZL39_RS01725 - 357963..358844 (+) 882 WP_308384722.1 ATP-binding cassette domain-containing protein -
  QZL39_RS01730 - 358930..359355 (+) 426 WP_024703485.1 phosphate-starvation-inducible PsiE family protein -
  QZL39_RS01735 - 359514..360203 (-) 690 WP_054395293.1 GGDEF domain-containing protein -
  QZL39_RS01740 - 360541..361527 (+) 987 WP_203501027.1 WYL domain-containing protein -
  QZL39_RS01745 - 361508..361900 (+) 393 WP_053812565.1 TerB family tellurite resistance protein -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 31610.65 Da        Isoelectric Point: 4.4929

>NTDB_id=836818 QZL39_RS01720 WP_021823357.1 357069..357926(+) (amiE) [Vibrio parahaemolyticus strain I14B]
MENDVILSVKDLEVEFITDDGPVKVLHGVNFDVRSGRTLGLVGESGSGKSVTSMSIMGLLPKPYGNIVNGEVNYRGTNLV
SLPAEEMYAMRGDRISIIFQDPMTALNPVHTIGRQLCEVLELHRPELGKKERESYAVEMLAKVKIPMPEKRLNEYPHNLS
GGMRQRVMIAMALACKPDILICDEPTTALDVTVQASILELMNELQEETGMAMIFITHDLGVVAEVCDDVAVMYGGRIVEK
AEIFELFDNPQHPYTERLMGLMPSLDNEPKQMIDIKPIDASMFAS

Nucleotide


Download         Length: 858 bp        

>NTDB_id=836818 QZL39_RS01720 WP_021823357.1 357069..357926(+) (amiE) [Vibrio parahaemolyticus strain I14B]
ATGGAAAACGATGTAATTTTGAGTGTAAAAGACCTCGAAGTGGAATTCATCACGGATGATGGCCCGGTAAAAGTACTCCA
TGGCGTGAACTTTGATGTTCGCTCAGGACGAACGCTCGGTCTCGTTGGTGAGTCTGGCAGTGGTAAGAGCGTTACCTCTA
TGTCCATCATGGGGCTGTTGCCAAAGCCTTACGGCAATATTGTCAATGGTGAAGTTAACTACCGAGGTACCAATCTGGTG
TCGTTACCAGCGGAAGAAATGTACGCCATGCGCGGCGACCGCATTTCGATCATTTTCCAAGACCCAATGACGGCGTTGAA
TCCAGTGCATACCATTGGCCGCCAACTGTGCGAAGTGTTGGAATTACACCGTCCTGAGTTAGGTAAAAAAGAGCGCGAAT
CTTACGCGGTAGAAATGCTGGCTAAAGTGAAAATTCCAATGCCAGAAAAGCGCCTCAACGAATACCCACACAACCTATCT
GGTGGTATGCGCCAGCGCGTAATGATCGCAATGGCACTCGCATGTAAACCAGACATTTTGATTTGTGATGAGCCAACGAC
AGCACTGGATGTAACAGTACAGGCGTCTATCCTTGAATTAATGAATGAACTTCAAGAAGAAACAGGCATGGCAATGATCT
TCATTACCCATGATTTAGGCGTAGTCGCTGAAGTGTGTGATGACGTTGCGGTAATGTATGGTGGTCGTATTGTCGAAAAA
GCGGAGATTTTTGAGCTGTTTGACAATCCGCAGCACCCTTACACGGAACGTTTGATGGGCTTAATGCCAAGCTTGGACAA
CGAACCTAAGCAGATGATTGATATCAAACCAATCGATGCCAGCATGTTTGCTAGCTAA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(238-273)

ABC transporter (ABC_tran)

(26-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

48.582

98.947

0.481
  amiE Streptococcus thermophilus LMD-9

48.582

98.947

0.481
  amiE Streptococcus salivarius strain HSISS4

48.582

98.947

0.481
  oppD Streptococcus mutans UA159

50.752

93.333

0.474
  amiF Streptococcus salivarius strain HSISS4

39.464

91.579

0.361