Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   QNK01_RS07690 Genome accession   NZ_CP126128
Coordinates   1565010..1566830 (+) Length   606 a.a.
NCBI ID   WP_284028939.1    Uniprot ID   -
Organism   Desemzia incerta strain EGm139     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1560010..1571830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNK01_RS07670 (QNK01_07670) trpS 1560668..1561672 (-) 1005 WP_284028936.1 tryptophan--tRNA ligase -
  QNK01_RS07675 (QNK01_07675) spxA 1562186..1562584 (+) 399 WP_092479726.1 transcriptional regulator SpxA -
  QNK01_RS07680 (QNK01_07680) - 1562860..1563537 (+) 678 WP_284028937.1 adaptor protein MecA -
  QNK01_RS07685 (QNK01_07685) - 1563760..1564923 (+) 1164 WP_284028938.1 competence protein CoiA family protein -
  QNK01_RS07690 (QNK01_07690) pepF 1565010..1566830 (+) 1821 WP_284028939.1 oligoendopeptidase F Regulator
  QNK01_RS07695 (QNK01_07695) - 1566965..1567603 (-) 639 WP_284028940.1 DsbA family protein -
  QNK01_RS07700 (QNK01_07700) - 1567780..1568379 (-) 600 WP_284028941.1 CYTH domain-containing protein -
  QNK01_RS07705 (QNK01_07705) - 1568542..1569129 (+) 588 WP_284028942.1 GTP pyrophosphokinase family protein -
  QNK01_RS07710 (QNK01_07710) - 1569175..1569987 (+) 813 WP_092479719.1 NAD kinase -
  QNK01_RS07715 (QNK01_07715) - 1569977..1570864 (+) 888 WP_092479718.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 606 a.a.        Molecular weight: 69162.15 Da        Isoelectric Point: 4.6946

>NTDB_id=836810 QNK01_RS07690 WP_284028939.1 1565010..1566830(+) (pepF) [Desemzia incerta strain EGm139]
MSESNKLPKRHEVPEELTWDLTVIFNSDAEFEKAYQDVEGSLAKITEFKGKLQEGATTFQQAVETLLDVSNKLETVYVYA
HLKNDQDTANSTYQGMYDSASLLAAKSGEAMAWFEPEVLEIPENQLNSYFEENKELAVYRHFIDQMTDNRDHILSANEEA
LLAGASEIFGASSKTFSVLNNADIQFPTIKDENGEDVQLSHGVFGELLESTNRSVREQAFKKLYSVYQGLKNTFASTLGS
NVKYHNYNAKVHHYGSAREAALANNHIPESVHDNLIEVVAEHLPLLHRYVALRKELLGVDELHMYDMYTPITGEAGIKYT
YEEAKEETMKALQPLGKEYEAVLKEAFENRWIDVVENTGKRSGAYSSGAYATNPYILLNWHDSLNNLYTLVHELGHSAHS
YFTRKNQPYVYGDYSIFLAEIASTTNENILTEYLLQTVTDPKVRVYILNHYLDGFKGTIFRQTQFAEFEHTIHEEARKGT
PLTAEFLTNYYGELNARYYGPAVEKDPEIAYEWSRIPHFYYNYYVYQYSTGFSAATALADKIMSGEEGALDKYLTYLKSG
NSDFPIEVMKKAGVDMTEKDYIEKAMAVFERRLNELEELIKEVKAD

Nucleotide


Download         Length: 1821 bp        

>NTDB_id=836810 QNK01_RS07690 WP_284028939.1 1565010..1566830(+) (pepF) [Desemzia incerta strain EGm139]
ATGAGTGAATCAAACAAATTACCAAAACGACATGAAGTACCAGAAGAACTGACTTGGGATCTAACAGTTATTTTTAATTC
AGATGCTGAATTTGAAAAAGCCTACCAGGATGTTGAAGGAAGTTTAGCTAAAATAACTGAGTTTAAGGGTAAATTGCAAG
AAGGTGCAACAACATTCCAACAAGCTGTCGAAACGTTATTAGATGTTTCTAACAAACTTGAAACAGTCTATGTATACGCT
CATTTAAAAAATGATCAGGATACAGCTAATTCTACCTATCAAGGTATGTATGATTCAGCTTCTTTATTGGCAGCCAAATC
TGGAGAAGCAATGGCTTGGTTTGAACCAGAAGTACTAGAAATTCCTGAAAATCAACTAAACAGTTATTTTGAAGAAAATA
AAGAACTAGCTGTTTACCGTCACTTTATCGATCAGATGACTGATAACCGAGATCATATTCTATCTGCAAATGAAGAAGCT
TTATTAGCAGGAGCTAGTGAAATATTTGGGGCTTCAAGCAAGACGTTTAGTGTGTTGAACAATGCAGATATCCAATTTCC
TACTATAAAAGATGAAAACGGCGAAGATGTCCAACTATCTCATGGGGTATTTGGAGAATTGCTGGAAAGCACAAATCGTT
CGGTACGTGAACAAGCTTTCAAAAAACTTTACAGTGTATATCAAGGATTAAAAAACACCTTTGCCAGTACGTTGGGATCA
AATGTGAAATACCATAATTACAATGCGAAAGTGCACCATTATGGCTCTGCCAGAGAGGCTGCTTTAGCAAATAATCATAT
TCCGGAATCAGTTCACGATAATTTGATTGAAGTGGTAGCAGAACATTTGCCATTGCTTCACCGTTACGTAGCCCTTAGAA
AAGAATTGTTGGGAGTAGACGAATTGCATATGTATGATATGTATACACCAATCACAGGAGAAGCTGGGATCAAGTATACA
TATGAGGAAGCCAAAGAGGAAACGATGAAAGCTCTTCAACCTCTTGGAAAAGAGTATGAGGCAGTTTTAAAAGAAGCTTT
TGAAAACCGCTGGATCGATGTGGTTGAAAATACTGGAAAACGAAGTGGAGCTTACTCATCCGGAGCTTATGCGACCAATC
CTTACATTTTATTGAATTGGCACGATTCTTTAAACAATTTGTATACGTTAGTGCATGAATTAGGGCACAGTGCTCACAGT
TACTTTACGAGAAAAAATCAACCATATGTATATGGAGATTACTCTATTTTCTTAGCGGAGATTGCCTCTACAACTAATGA
GAACATCTTAACAGAATATCTGCTGCAAACGGTAACGGATCCAAAAGTACGTGTGTACATTTTAAACCATTATTTGGATG
GGTTTAAAGGAACTATTTTCCGTCAAACTCAATTTGCTGAGTTTGAACACACAATACATGAAGAAGCTAGAAAGGGAACT
CCTTTAACAGCAGAGTTTTTAACGAACTATTATGGAGAACTAAATGCTCGTTATTATGGCCCTGCAGTAGAAAAAGATCC
CGAAATTGCTTACGAATGGTCTCGCATTCCTCATTTCTACTACAATTATTATGTGTATCAATATTCAACAGGATTCTCTG
CAGCTACTGCTTTAGCAGATAAAATCATGAGTGGAGAAGAAGGCGCATTAGATAAATACCTAACGTATCTAAAATCTGGT
AATAGCGACTTTCCGATTGAAGTTATGAAAAAAGCTGGCGTGGATATGACAGAAAAAGACTACATTGAAAAAGCTATGGC
TGTCTTCGAAAGACGTTTGAACGAATTAGAAGAATTAATAAAAGAAGTAAAAGCAGACTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-587)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.626

97.855

0.525