Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   QNK01_RS07280 Genome accession   NZ_CP126128
Coordinates   1466811..1468523 (+) Length   570 a.a.
NCBI ID   WP_284028885.1    Uniprot ID   -
Organism   Desemzia incerta strain EGm139     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1461811..1473523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNK01_RS07250 (QNK01_07250) - 1461884..1462735 (+) 852 WP_284028880.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  QNK01_RS07255 (QNK01_07255) xseA 1462752..1464092 (+) 1341 WP_284028881.1 exodeoxyribonuclease VII large subunit -
  QNK01_RS07260 (QNK01_07260) - 1464085..1464339 (+) 255 WP_284028882.1 exodeoxyribonuclease VII small subunit -
  QNK01_RS07265 (QNK01_07265) - 1464357..1465274 (+) 918 WP_284028883.1 polyprenyl synthetase family protein -
  QNK01_RS07270 (QNK01_07270) - 1465271..1466095 (+) 825 WP_284028884.1 TlyA family RNA methyltransferase -
  QNK01_RS07275 (QNK01_07275) argR 1466330..1466779 (+) 450 WP_092479797.1 arginine repressor -
  QNK01_RS07280 (QNK01_07280) recN 1466811..1468523 (+) 1713 WP_284028885.1 DNA repair protein RecN Machinery gene
  QNK01_RS07285 (QNK01_07285) - 1468805..1469767 (-) 963 WP_284028886.1 magnesium transporter CorA family protein -
  QNK01_RS07290 (QNK01_07290) - 1469925..1471244 (+) 1320 WP_284028859.1 IS1380 family transposase -
  QNK01_RS07295 (QNK01_07295) gndA 1471671..1473107 (+) 1437 WP_284028887.1 NADP-dependent phosphogluconate dehydrogenase -

Sequence

Protein


Download         Length: 570 a.a.        Molecular weight: 64250.82 Da        Isoelectric Point: 4.7101

>NTDB_id=836805 QNK01_RS07280 WP_284028885.1 1466811..1468523(+) (recN) [Desemzia incerta strain EGm139]
MLQELAIKNFAIIHDLALSFEKGMTVLTGETGAGKSIIIDAVGLIAGGRGSSEFIRHGAEKCTLEGQFAVEGNPATHALL
DKYQIDIEEETLIIQRDIHRSGRNVCRVNGRLVNIATLREIGESLIDIHGQSEHQELMHSERHLNMLDQFGDEELIALKR
TYSKAYQEYKEIEKTVLNSQSSEQELAQRVDMLRFQTNEIEMAELTVGEDVTLEEEKNLLSNYQKIVESLNVAYGALQGE
EYGGVDLVGNAMSALETIEDIDSSYKRISEIVSNSYFQLQEAASDILKEQDQLAYDENRLNEIEKRLEIIQQLKRKYGES
IKDILVYYEEISIELDNILNRETHLSRLTEELETIKKDLVKQGKQLTRKRKETADQLQTAIQEQLKELYMDKVQFEARFI
SAKENETAIYESGLDHVEFYIATNLGEPLKPLARVASGGELSRVMLALKTVFSKTQGITSIIFDEVDTGVSGRVAQAIAN
KIYKVAVHSQVLCITHLPQVAAMADNHLYISKAIVEDRTETIVNKLKDAEQINELARMLAGTEITKLSIEHAKELKDLAY
KEKQGNVNQA

Nucleotide


Download         Length: 1713 bp        

>NTDB_id=836805 QNK01_RS07280 WP_284028885.1 1466811..1468523(+) (recN) [Desemzia incerta strain EGm139]
GTGCTACAAGAATTAGCTATTAAGAATTTTGCTATTATTCACGACTTAGCTTTGAGTTTTGAAAAAGGAATGACTGTACT
TACAGGTGAGACAGGAGCCGGAAAGTCTATCATTATTGACGCTGTGGGGCTAATTGCTGGAGGCAGAGGATCCAGTGAGT
TTATTCGTCATGGTGCAGAAAAGTGCACCTTAGAAGGACAGTTCGCAGTGGAAGGAAACCCGGCTACTCATGCTTTACTG
GATAAATATCAAATCGATATCGAAGAAGAAACTCTCATTATTCAAAGAGATATCCATCGAAGCGGGCGAAACGTTTGCCG
AGTGAATGGTCGTTTAGTGAATATAGCTACTTTACGTGAGATTGGCGAAAGCTTGATCGATATTCACGGGCAAAGTGAAC
ACCAAGAATTGATGCATTCAGAAAGACATTTGAATATGCTTGATCAATTTGGTGATGAAGAATTGATTGCATTAAAGAGA
ACTTACAGTAAGGCTTACCAAGAATACAAAGAAATCGAAAAAACCGTATTGAATAGTCAATCGAGCGAGCAGGAACTTGC
TCAACGAGTAGACATGCTGCGTTTCCAGACAAACGAGATCGAAATGGCTGAACTCACAGTTGGAGAAGACGTCACTTTAG
AAGAAGAAAAAAATCTGCTTTCCAATTATCAAAAAATTGTAGAGTCTTTGAATGTGGCGTATGGAGCGTTGCAAGGAGAA
GAGTACGGAGGCGTGGATCTCGTTGGCAATGCTATGTCCGCGCTTGAAACTATCGAAGATATCGATTCATCATATAAACG
GATCTCAGAGATTGTTTCTAATAGCTACTTTCAATTGCAAGAAGCAGCAAGTGATATTTTAAAAGAACAAGATCAATTAG
CGTATGATGAAAATCGATTGAATGAAATTGAAAAGAGATTGGAAATTATCCAACAATTAAAACGCAAATATGGAGAATCC
ATAAAAGATATCCTAGTCTACTATGAAGAAATCTCGATTGAACTGGATAATATCTTAAATCGCGAAACTCATCTATCACG
TTTAACAGAAGAACTTGAGACGATCAAAAAAGACTTGGTCAAGCAAGGGAAACAATTGACGCGTAAAAGAAAAGAAACAG
CCGATCAATTACAAACAGCTATACAAGAACAATTAAAAGAACTGTACATGGACAAAGTCCAATTTGAAGCACGATTTATT
TCAGCAAAAGAAAATGAGACAGCTATTTATGAGTCGGGTTTGGATCATGTTGAATTCTATATTGCGACCAATTTAGGAGA
GCCCTTAAAACCATTAGCAAGGGTTGCTTCTGGAGGAGAGTTGTCTCGTGTCATGCTGGCCTTGAAAACAGTTTTTTCGA
AGACTCAAGGGATCACGAGCATTATTTTTGATGAGGTGGATACGGGAGTAAGCGGACGAGTTGCTCAAGCTATAGCCAAT
AAAATCTACAAAGTTGCTGTCCACTCACAAGTGCTTTGTATTACGCATCTTCCACAAGTTGCAGCAATGGCAGACAACCA
TTTGTATATTTCTAAAGCTATTGTAGAAGATCGTACGGAAACCATTGTGAACAAATTAAAAGACGCTGAACAAATCAATG
AACTGGCTCGCATGTTAGCCGGAACAGAAATCACTAAATTATCCATTGAACATGCTAAAGAGTTAAAAGACTTAGCCTAC
AAGGAAAAACAAGGAAACGTAAACCAAGCCTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.297

99.298

0.519