Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   U7118_RS22115 Genome accession   NZ_CP141283
Coordinates   4112781..4113011 (-) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis strain DKU_09     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4107781..4118011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U7118_RS22105 (U7118_22105) spoVT 4108506..4109042 (-) 537 WP_003218365.1 stage V sporulation protein T -
  U7118_RS22110 (U7118_22110) mfd 4109178..4112711 (-) 3534 WP_003243453.1 transcription-repair coupling factor -
  U7118_RS22115 (U7118_22115) subA/fin 4112781..4113011 (-) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  U7118_RS22120 (U7118_22120) pth 4113071..4113637 (-) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  U7118_RS22125 (U7118_22125) rplYB 4113744..4114358 (-) 615 WP_003243443.1 50S ribosomal protein L25/general stress protein Ctc -
  U7118_RS22130 (U7118_22130) prsS 4114443..4115396 (-) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  U7118_RS22135 (U7118_22135) glmU 4115419..4116789 (-) 1371 WP_015382564.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  U7118_RS22140 (U7118_22140) spoVG 4116982..4117275 (-) 294 WP_003218346.1 septation regulator SpoVG -
  U7118_RS22145 (U7118_22145) ridA 4117470..4117847 (-) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=836799 U7118_RS22115 WP_003243417.1 4112781..4113011(-) (subA/fin) [Bacillus subtilis strain DKU_09]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=836799 U7118_RS22115 WP_003243417.1 4112781..4113011(-) (subA/fin) [Bacillus subtilis strain DKU_09]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1