Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QNK01_RS03360 Genome accession   NZ_CP126128
Coordinates   664825..666198 (-) Length   457 a.a.
NCBI ID   WP_230524078.1    Uniprot ID   -
Organism   Desemzia incerta strain EGm139     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 659825..671198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNK01_RS03340 (QNK01_03340) epsC 659960..660499 (-) 540 WP_284029872.1 serine O-acetyltransferase EpsC -
  QNK01_RS03345 (QNK01_03345) gltX 661255..662727 (-) 1473 WP_092480851.1 glutamate--tRNA ligase -
  QNK01_RS03350 (QNK01_03350) ispD 662865..663587 (-) 723 WP_223156108.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  QNK01_RS03355 (QNK01_03355) - 663600..664709 (-) 1110 WP_284029873.1 PIN/TRAM domain-containing protein -
  QNK01_RS03360 (QNK01_03360) radA 664825..666198 (-) 1374 WP_230524078.1 DNA repair protein RadA Machinery gene
  QNK01_RS03365 (QNK01_03365) - 666371..666910 (-) 540 WP_284029874.1 dUTP diphosphatase -
  QNK01_RS03370 (QNK01_03370) ugpC 667492..668619 (+) 1128 WP_284029875.1 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC -
  QNK01_RS03375 (QNK01_03375) - 668803..669543 (-) 741 WP_284029876.1 polysaccharide deacetylase family protein -
  QNK01_RS03380 (QNK01_03380) menA 669585..670526 (-) 942 WP_284029877.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49926.46 Da        Isoelectric Point: 7.6842

>NTDB_id=836791 QNK01_RS03360 WP_230524078.1 664825..666198(-) (radA) [Desemzia incerta strain EGm139]
MAKKKSTKFVCQSCGYESPKWMGRCPNCGSWNEMMEEMVVDKDDRRSRVSMTGTTAKAQLVQDVTISNETRVKTKLGELN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSAQLNMTGGKVLYVTGEESATQIKLRATRLGVDGEKFYIYPETDMSAIRK
TIEEIRPEYVIIDSIQTMNQPDITSAAGSVSQVRENTSELMKIAKTNNIAIFIVGHVTKEGALAGPRMLEHMVDTVLYFE
GDRHQSFRILRAVKNRFGSTNEIGIFEMRESGLQEVLNPSEMFLEERLTGANGSSVVAAMEGTRPILVEIQALLTPTAFG
NAKRTASGLDHNRVSLIMAVLEKRANLLLQNQDAYLKAAGGVRLDEPAIDLAIAISIASSYKERGTQATDCFIGEIGLTG
EIRRVSHIEQRVKEAAKLGFERIFIPKNNIGGWTLPKEITVVGVETISEALKKALGD

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=836791 QNK01_RS03360 WP_230524078.1 664825..666198(-) (radA) [Desemzia incerta strain EGm139]
TTGGCCAAAAAGAAATCGACTAAATTTGTTTGTCAATCTTGCGGTTATGAATCTCCTAAGTGGATGGGACGTTGTCCTAA
TTGTGGCAGTTGGAATGAAATGATGGAAGAAATGGTAGTAGATAAAGATGATCGTCGCAGCCGCGTCAGTATGACGGGTA
CGACCGCTAAAGCTCAACTGGTCCAAGATGTAACGATTTCAAATGAAACTCGTGTAAAAACCAAATTAGGCGAATTGAAC
CGAGTATTAGGCGGGGGAGTAGTTCCCGGATCATTGGTCCTTATCGGTGGAGACCCGGGTATCGGAAAATCCACTTTACT
ATTGCAAGTATCAGCTCAACTCAACATGACAGGCGGGAAAGTACTTTATGTAACTGGAGAAGAGAGCGCGACACAAATTA
AGCTGCGTGCTACTCGTTTAGGTGTAGATGGAGAAAAATTCTACATTTACCCAGAAACAGATATGAGTGCGATTAGAAAA
ACCATTGAAGAGATCAGACCGGAATACGTTATTATTGACTCGATCCAAACAATGAATCAACCAGATATTACGAGCGCTGC
AGGAAGCGTCTCACAAGTACGTGAAAATACTTCAGAATTGATGAAAATAGCTAAAACCAACAACATTGCAATTTTTATTG
TTGGGCATGTAACCAAAGAAGGAGCTTTAGCTGGACCGCGAATGCTGGAACATATGGTAGATACGGTTTTGTATTTTGAA
GGCGACCGTCACCAATCGTTTAGAATTTTGCGGGCAGTCAAAAACCGCTTTGGTTCCACGAATGAAATTGGAATTTTTGA
AATGCGGGAAAGCGGTCTGCAAGAAGTGCTGAATCCATCAGAAATGTTTCTAGAGGAGCGGCTGACTGGAGCAAACGGAT
CATCAGTCGTAGCAGCTATGGAAGGTACAAGACCAATCTTAGTGGAAATTCAAGCCTTACTGACTCCGACAGCATTTGGT
AATGCGAAACGAACGGCTAGTGGATTGGACCACAACCGTGTGTCATTGATCATGGCGGTGCTGGAAAAAAGGGCTAACCT
GTTATTGCAAAATCAAGATGCTTATTTGAAAGCAGCTGGTGGAGTAAGGTTGGATGAACCTGCTATTGATTTGGCGATAG
CAATCAGTATTGCATCAAGCTACAAAGAAAGAGGTACCCAAGCTACAGATTGTTTTATCGGCGAAATTGGTTTAACAGGT
GAGATACGACGTGTGAGTCATATCGAGCAGCGTGTTAAAGAAGCAGCCAAGTTAGGGTTTGAAAGAATCTTTATTCCTAA
AAACAATATCGGCGGCTGGACATTGCCGAAAGAAATTACCGTAGTAGGTGTGGAAACAATCAGCGAAGCCTTGAAAAAAG
CACTCGGCGACTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-34)

AAA domain (AAA_25)

(72-221)

Subunit ChlI of Mg-chelatase (ChlI)

(365-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae TIGR4

70.11

99.562

0.698
  radA Streptococcus pneumoniae D39

70.11

99.562

0.698
  radA Streptococcus pneumoniae R6

70.11

99.562

0.698
  radA Streptococcus pneumoniae Rx1

70.11

99.562

0.698
  radA Streptococcus mitis NCTC 12261

69.89

99.562

0.696
  radA Streptococcus mitis SK321

69.67

99.562

0.694
  radA Bacillus subtilis subsp. subtilis str. 168

68.996

100

0.691