Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   QNK01_RS03270 Genome accession   NZ_CP126128
Coordinates   647745..649511 (-) Length   588 a.a.
NCBI ID   WP_284029865.1    Uniprot ID   -
Organism   Desemzia incerta strain EGm139     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 642745..654511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNK01_RS03250 (QNK01_03250) fetB 643187..643945 (+) 759 WP_284029862.1 iron export ABC transporter permease subunit FetB -
  QNK01_RS03255 (QNK01_03255) - 644181..644381 (+) 201 WP_284029863.1 cold-shock protein -
  QNK01_RS03260 (QNK01_03260) - 644586..645626 (+) 1041 WP_284029864.1 SDR family oxidoreductase -
  QNK01_RS03265 (QNK01_03265) rcrQ 645971..647707 (-) 1737 WP_284030205.1 ABC transporter ATP-binding protein Regulator
  QNK01_RS03270 (QNK01_03270) rcrP 647745..649511 (-) 1767 WP_284029865.1 ABC transporter ATP-binding protein Regulator
  QNK01_RS03275 (QNK01_03275) - 649531..649977 (-) 447 WP_188204959.1 MarR family winged helix-turn-helix transcriptional regulator -
  QNK01_RS03280 (QNK01_03280) - 650137..650619 (-) 483 WP_284029866.1 class A sortase -
  QNK01_RS03285 (QNK01_03285) - 650894..651805 (+) 912 WP_092480863.1 AEC family transporter -
  QNK01_RS03290 (QNK01_03290) - 651846..652280 (-) 435 WP_092480862.1 organic hydroperoxide resistance protein -
  QNK01_RS03295 (QNK01_03295) - 652273..652716 (-) 444 WP_092480861.1 MarR family transcriptional regulator -
  QNK01_RS03300 (QNK01_03300) - 652874..653359 (+) 486 Protein_630 NAD(P)H-dependent oxidoreductase -

Sequence

Protein


Download         Length: 588 a.a.        Molecular weight: 65187.83 Da        Isoelectric Point: 4.8488

>NTDB_id=836790 QNK01_RS03270 WP_284029865.1 647745..649511(-) (rcrP) [Desemzia incerta strain EGm139]
MIQLLKYLKTKDWGIVFMVLLFIIAQVFLDLKLPDYMSEITVKVQTPGSETSEIIQTGGYMMLCALGSLVAAIIVSFLST
RLAASFAKNLRERQFDKVESFSMQEINGFSTSSLITRSTNDITQVQMFIAVGMQILFKAPIMAVWALTKISNKNWQWTAA
TGITVVALLAVIITVISLALPRFKRIQSLTDNLTSVTRENLTGIRVVRAYNAEDHEESKFETANTALNQNYLFTTRLMAF
MSPSMVAAMNGLSLAIYWIGAYLINESMDMMERITIFSDMVVFSSYAIQVVMSFVMLTFVFVILPGAQVSANRIKEVLNT
DSTINDGTVTEGKDNLEGEIEFRNVSFKYPDAADYVIKDISFKARKGETIAFIGSTGSGKSTIVNLVPRFYDPTEGEILI
DGVNVKDYTQEALRNKIGYVPQKAVLFSGTIASNIAFGENGKEEISRDAVKHAISVAKGTDFVEKTENQYEGHVAQGGNN
FSGGQKQRMAIARAIARDPEIFVFDDSFSALDYKTDRELRSQLKEEASGVTNLIVGQRIGTIKDADTIIVLDEGRIVGKG
THTELLETSEVYREIAYSQLSEEELASE

Nucleotide


Download         Length: 1767 bp        

>NTDB_id=836790 QNK01_RS03270 WP_284029865.1 647745..649511(-) (rcrP) [Desemzia incerta strain EGm139]
ATGATACAGTTGTTAAAATATTTAAAAACGAAAGACTGGGGAATCGTTTTTATGGTTCTCCTATTTATTATTGCTCAAGT
CTTCTTAGATTTGAAATTACCAGACTATATGTCTGAAATCACTGTTAAGGTTCAAACACCAGGTAGTGAGACCAGTGAAA
TCATCCAAACAGGTGGATACATGATGCTGTGCGCTTTAGGAAGTTTAGTAGCGGCAATTATCGTCAGCTTCCTGTCTACA
AGACTAGCAGCTTCGTTTGCTAAAAATTTGAGAGAAAGACAATTTGATAAAGTGGAAAGTTTCTCGATGCAAGAGATCAA
TGGTTTCTCGACTTCCAGCTTGATCACTCGTTCAACAAATGACATCACTCAAGTGCAAATGTTTATTGCAGTGGGAATGC
AAATATTGTTTAAAGCACCTATCATGGCAGTTTGGGCGTTAACAAAAATCTCTAATAAGAACTGGCAATGGACAGCAGCT
ACTGGAATCACTGTAGTCGCATTGTTAGCGGTGATTATTACGGTTATATCTTTGGCATTGCCTAGATTCAAACGTATCCA
GTCATTAACTGATAACTTAACCTCTGTTACAAGAGAGAACTTAACAGGGATTCGCGTAGTTCGCGCATATAACGCTGAAG
ACCATGAAGAAAGTAAATTTGAGACAGCTAATACAGCTTTGAATCAAAATTACTTATTTACGACACGTTTGATGGCGTTT
ATGTCCCCAAGTATGGTCGCTGCAATGAATGGATTGAGTTTAGCGATCTACTGGATCGGAGCTTATTTGATCAATGAATC
GATGGACATGATGGAGCGCATCACTATTTTCAGTGACATGGTCGTGTTCTCTTCTTATGCCATCCAAGTCGTGATGTCAT
TCGTTATGTTGACATTTGTTTTCGTGATCTTGCCAGGAGCACAAGTTTCGGCAAATCGTATCAAAGAAGTTTTAAATACG
GATTCTACTATTAATGATGGAACAGTAACAGAAGGAAAAGACAATTTAGAAGGTGAAATTGAATTCCGCAATGTCAGTTT
CAAATATCCGGATGCTGCTGATTATGTGATCAAAGATATCAGCTTCAAAGCGCGTAAAGGAGAAACCATTGCGTTTATCG
GATCAACAGGAAGCGGTAAAAGTACGATCGTCAATCTTGTGCCGCGTTTCTACGACCCGACAGAAGGTGAAATTTTAATT
GATGGTGTGAACGTAAAAGATTATACCCAAGAAGCGTTGCGCAATAAAATCGGGTACGTTCCTCAAAAAGCTGTCTTGTT
CAGTGGAACGATCGCTTCGAATATTGCTTTCGGGGAAAATGGAAAAGAAGAAATCTCTAGAGATGCGGTAAAACATGCAA
TCAGTGTAGCCAAAGGAACGGATTTTGTTGAAAAAACAGAGAACCAATACGAAGGTCACGTTGCTCAAGGCGGGAACAAC
TTCTCCGGAGGTCAAAAACAACGTATGGCGATTGCCAGAGCGATTGCTCGTGATCCGGAAATCTTCGTTTTTGATGATTC
ATTCTCTGCATTAGACTACAAAACAGACCGCGAATTGCGTTCGCAATTGAAAGAAGAAGCAAGCGGAGTCACTAATCTGA
TTGTTGGCCAACGAATTGGAACAATCAAAGACGCTGACACGATCATTGTACTAGATGAAGGTCGGATCGTTGGAAAAGGT
ACGCATACAGAATTGCTGGAAACATCTGAAGTGTACCGCGAAATTGCTTATTCTCAATTATCAGAGGAGGAATTAGCTAG
TGAGTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(16-293)

ABC transporter (ABC_tran)

(358-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

52.181

100

0.529