Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   QNK01_RS03265 Genome accession   NZ_CP126128
Coordinates   645971..647707 (-) Length   578 a.a.
NCBI ID   WP_284030205.1    Uniprot ID   -
Organism   Desemzia incerta strain EGm139     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 640971..652707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNK01_RS03240 (QNK01_03240) - 641233..642324 (-) 1092 WP_284029861.1 MupG family TIM beta-alpha barrel fold protein -
  QNK01_RS03245 (QNK01_03245) - 642526..643203 (+) 678 WP_284030204.1 ATP-binding cassette domain-containing protein -
  QNK01_RS03250 (QNK01_03250) fetB 643187..643945 (+) 759 WP_284029862.1 iron export ABC transporter permease subunit FetB -
  QNK01_RS03255 (QNK01_03255) - 644181..644381 (+) 201 WP_284029863.1 cold-shock protein -
  QNK01_RS03260 (QNK01_03260) - 644586..645626 (+) 1041 WP_284029864.1 SDR family oxidoreductase -
  QNK01_RS03265 (QNK01_03265) rcrQ 645971..647707 (-) 1737 WP_284030205.1 ABC transporter ATP-binding protein Regulator
  QNK01_RS03270 (QNK01_03270) rcrP 647745..649511 (-) 1767 WP_284029865.1 ABC transporter ATP-binding protein Regulator
  QNK01_RS03275 (QNK01_03275) - 649531..649977 (-) 447 WP_188204959.1 MarR family winged helix-turn-helix transcriptional regulator -
  QNK01_RS03280 (QNK01_03280) - 650137..650619 (-) 483 WP_284029866.1 class A sortase -
  QNK01_RS03285 (QNK01_03285) - 650894..651805 (+) 912 WP_092480863.1 AEC family transporter -
  QNK01_RS03290 (QNK01_03290) - 651846..652280 (-) 435 WP_092480862.1 organic hydroperoxide resistance protein -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 63794.69 Da        Isoelectric Point: 5.3137

>NTDB_id=836789 QNK01_RS03265 WP_284030205.1 645971..647707(-) (rcrQ) [Desemzia incerta strain EGm139]
MKQTYKDLLAYINVYLPIVIVALVLAMGAAVISLIGPRQLSEITDLITAGLTGQLDIAAIEKIALLLVTLYVISYIANYV
QGFIMATITQRVSKKLRRDISEKINRLPLRYFDSNSVGDVLSRVTNDVDMISQTMNQSISTLVTATTMFLGSLFMMFITN
VPMTLAAIASTLIGFGLMILIVRHSQQYFGAQQKALGAVNGHVEEIYSGHNVVKAYNAERGAKETFDQINDDLYQSAWKS
QFFSGIMMPLMNFIGNFGYVVVSILGAVLALNGDITFGVIVAFMMYIRLFTQPLSQFAQAATSLQSTAAASERVFDFLHE
DELIDEKGKTSKLENIRGDVEFEHVHFGYTPEKTIINDFSVHIKPGQKVAIVGPTGAGKTTIVNLLMRFYEINSGSIKID
GIPTTDLTREDVHEQFCMVLQDTWIFQGTVRENIVYNVKGVTDEQVVAACKAVGIDHFIRTLPHGYDTVLDDQTSLSAGQ
KQLITIARALVKDAPLLILDEATSSVDTRTEALIQQAMDRLMVGRTSFVIAHRLSTIKNSDVILVMDNGDIIEKGNHLEL
LAAGGFYANLYNSQFEEA

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=836789 QNK01_RS03265 WP_284030205.1 645971..647707(-) (rcrQ) [Desemzia incerta strain EGm139]
ATGAAACAAACGTATAAAGACTTATTGGCTTACATCAATGTGTACTTGCCTATTGTGATAGTAGCACTTGTTTTAGCTAT
GGGAGCAGCAGTCATTTCGTTGATCGGTCCGCGCCAATTAAGTGAGATCACAGATTTGATCACAGCAGGATTGACAGGCC
AATTGGATATTGCAGCAATTGAAAAAATCGCTCTTCTCTTGGTGACTTTATATGTGATCAGTTACATTGCCAACTATGTT
CAAGGATTCATCATGGCAACGATCACGCAACGCGTTTCTAAAAAATTAAGAAGAGACATTTCTGAAAAAATCAATCGTTT
GCCATTGCGCTACTTCGACTCTAACAGTGTCGGAGATGTGTTGAGTCGAGTGACGAATGATGTCGACATGATCAGTCAAA
CGATGAATCAAAGTATCAGTACCCTAGTAACGGCAACAACTATGTTCTTGGGTTCGTTATTTATGATGTTCATTACAAAT
GTCCCGATGACTCTTGCAGCAATTGCTTCAACGTTGATCGGGTTCGGACTGATGATCTTGATCGTTAGACACTCTCAACA
ATACTTTGGAGCACAACAAAAAGCTTTAGGAGCCGTTAATGGACATGTGGAAGAAATTTATTCCGGTCATAATGTCGTAA
AAGCCTATAATGCTGAACGAGGAGCCAAAGAAACCTTTGACCAAATCAATGATGATTTGTACCAAAGTGCTTGGAAGTCT
CAATTCTTCTCTGGAATTATGATGCCATTGATGAACTTCATCGGGAACTTCGGTTATGTAGTTGTCAGTATTTTAGGAGC
TGTATTGGCTTTAAATGGAGATATTACTTTTGGTGTGATCGTAGCCTTTATGATGTACATTCGCTTGTTCACTCAACCGT
TATCTCAATTTGCACAAGCAGCAACGAGTCTGCAATCAACAGCTGCAGCAAGTGAACGCGTATTTGACTTCTTGCATGAA
GACGAATTGATAGACGAAAAAGGGAAGACAAGTAAATTGGAAAACATCCGTGGAGACGTGGAATTTGAGCATGTTCATTT
CGGATATACACCTGAGAAAACAATCATCAATGATTTCTCTGTGCATATCAAACCTGGTCAAAAAGTCGCTATTGTTGGAC
CGACTGGTGCTGGTAAGACAACCATCGTCAATTTATTAATGCGTTTCTATGAAATCAATAGCGGATCAATCAAAATTGAT
GGAATTCCAACAACGGATCTGACGCGTGAAGATGTCCATGAGCAGTTTTGTATGGTGCTTCAAGATACTTGGATCTTCCA
GGGTACTGTACGAGAAAATATCGTCTACAACGTCAAAGGTGTAACTGATGAGCAAGTTGTAGCGGCATGTAAAGCAGTAG
GTATCGATCACTTTATCCGTACTTTGCCTCATGGATACGATACAGTATTAGATGATCAAACCAGCTTGTCTGCTGGACAA
AAACAGTTGATCACAATCGCTCGTGCTTTAGTCAAAGATGCTCCATTATTGATTTTGGATGAAGCAACGAGTTCAGTAGA
TACTCGTACAGAAGCCTTGATTCAACAAGCAATGGACCGTTTGATGGTTGGGCGTACGTCATTTGTGATCGCTCACCGTT
TGTCTACGATCAAGAATTCTGATGTGATTTTGGTAATGGATAATGGAGACATCATCGAAAAAGGAAATCACTTAGAGTTA
TTGGCCGCTGGCGGGTTCTATGCAAACTTGTATAATAGCCAATTTGAAGAAGCTTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(357-504)

ABC transporter transmembrane region (ABC_membrane)

(19-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

59.036

100

0.593