Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   U7118_RS20060 Genome accession   NZ_CP141283
Coordinates   3710240..3710674 (-) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain DKU_09     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3705240..3715674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U7118_RS20045 (U7118_20045) poxB 3705639..3707363 (-) 1725 WP_046160070.1 pyruvate oxidase -
  U7118_RS20050 (U7118_20050) mutT 3707427..3707879 (-) 453 WP_103330338.1 8-oxo-dGTP diphosphatase MutT -
  U7118_RS20055 (U7118_20055) topB 3707992..3710175 (-) 2184 WP_324271379.1 DNA topoisomerase III -
  U7118_RS20060 (U7118_20060) lrpC 3710240..3710674 (-) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  U7118_RS20065 (U7118_20065) ydzA 3710859..3711149 (+) 291 WP_014478869.1 DUF3817 domain-containing protein -
  U7118_RS20070 (U7118_20070) amj 3711194..3712003 (-) 810 WP_014478868.1 lipid II flippase Amj -
  U7118_RS20075 (U7118_20075) ydaG 3712509..3712931 (-) 423 WP_014478867.1 pyridoxamine 5'-phosphate oxidase family protein -
  U7118_RS20080 (U7118_20080) ydaF 3713009..3713560 (-) 552 WP_014478866.1 GNAT family N-acetyltransferase -
  U7118_RS20085 (U7118_20085) lyxE 3713648..3714151 (-) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  U7118_RS20090 (U7118_20090) ydaD 3714167..3715027 (-) 861 WP_003246648.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=836782 U7118_RS20060 WP_003246585.1 3710240..3710674(-) (lrpC) [Bacillus subtilis strain DKU_09]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=836782 U7118_RS20060 WP_003246585.1 3710240..3710674(-) (lrpC) [Bacillus subtilis strain DKU_09]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATTAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1