Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   U7118_RS18755 Genome accession   NZ_CP141283
Coordinates   3458109..3459239 (-) Length   376 a.a.
NCBI ID   WP_014479091.1    Uniprot ID   -
Organism   Bacillus subtilis strain DKU_09     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3453109..3464239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U7118_RS18710 (U7118_18710) cotJC 3453146..3453715 (-) 570 WP_014479096.1 spore coat protein CotJC -
  U7118_RS18715 (U7118_18715) cotJB 3453730..3453993 (-) 264 WP_003219491.1 spore coat protein CotJB -
  U7118_RS18720 (U7118_18720) cotJA 3453977..3454225 (-) 249 WP_003219489.1 spore coat-associated protein CotJA -
  U7118_RS18725 (U7118_18725) yesF 3454351..3455219 (-) 869 Protein_3690 NAD-dependent epimerase/dehydratase family protein -
  U7118_RS18730 (U7118_18730) yesE 3455216..3455659 (-) 444 WP_003233857.1 nuclear transport factor 2 family protein -
  U7118_RS18735 (U7118_18735) yezE 3455738..3456322 (-) 585 WP_015252623.1 TetR/AcrR family transcriptional regulator -
  U7118_RS18740 (U7118_18740) - 3456439..3456933 (-) 495 WP_324271361.1 spore coat protein -
  U7118_RS18745 (U7118_18745) yeeI 3457067..3457786 (-) 720 WP_003233863.1 YebC/PmpR family DNA-binding transcriptional regulator -
  U7118_RS18750 (U7118_18750) phrH 3457946..3458119 (-) 174 WP_003242557.1 phosphatase RapH inhibitor PhrH -
  U7118_RS18755 (U7118_18755) rapC 3458109..3459239 (-) 1131 WP_014479091.1 response regulator aspartate phosphatase RapH Regulator
  U7118_RS18760 (U7118_18760) - 3459384..3460406 (-) 1023 WP_324271362.1 hypothetical protein -
  U7118_RS18765 (U7118_18765) yeeF 3460586..3462595 (+) 2010 WP_324271363.1 LXG family T7SS effector deoxyribonuclease toxin YeeF -
  U7118_RS18770 (U7118_18770) atxF 3462615..3463070 (+) 456 WP_213383044.1 TIGR01741 family protein -
  U7118_RS18775 (U7118_18775) yezA 3463303..3463509 (+) 207 WP_041056936.1 bacteriocin immunity protein -
  U7118_RS18780 (U7118_18780) - 3463576..3463871 (+) 296 Protein_3701 hypothetical protein -
  U7118_RS18785 (U7118_18785) - 3464090..3464191 (+) 102 Protein_3702 hypothetical protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44030.39 Da        Isoelectric Point: 5.9937

>NTDB_id=836780 U7118_RS18755 WP_014479091.1 3458109..3459239(-) (rapC) [Bacillus subtilis strain DKU_09]
MSQAIPSSRVGVKINEWYKMIRQFSVPDAEVLKAEVEQDIQKMEEDQDLLIYYSLMCFRHQLMLDYLEPGQPYGNRPTVT
ELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDEIEKAEFHFKVAEAYYHMKQTHVSMH
HILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEKALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAV
EHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL
LSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECLYAY

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=836780 U7118_RS18755 WP_014479091.1 3458109..3459239(-) (rapC) [Bacillus subtilis strain DKU_09]
TTGAGTCAAGCCATACCGTCTTCGCGTGTAGGTGTTAAGATTAATGAATGGTACAAGATGATTCGCCAGTTCAGTGTTCC
GGATGCTGAGGTTCTGAAAGCGGAGGTGGAGCAGGACATTCAGAAGATGGAAGAGGATCAGGATTTGCTGATCTATTATT
CTCTGATGTGTTTTCGGCACCAGCTGATGCTTGATTATTTGGAGCCGGGACAGCCTTACGGAAATCGTCCTACAGTGACA
GAGCTTCTTGAAACGATTGAGACCCCTCAGAAAAAACTCACAGGCCTTTTGAAATACTACTCTTTGTTTTTCCGCGGCAT
GTATGAATTTGACCAAAAAGAATATGTGGAAGCGATCGGGTATTATCGCGAGGCGGAGAAAGAACTGCCGTTTGTGTCAG
ATGAAATTGAGAAAGCGGAATTCCATTTTAAAGTGGCCGAAGCGTATTATCACATGAAGCAAACCCATGTGTCGATGCAT
CATATTCTTCAAGCCTTAGACATTTATCAAAACCATCCCTTATACAGCATTAGAACGATACAAAGCTTGTTTGTGATCGC
CGGCAACTATGATGATTTCAAACATTATGATAAAGCGCTCCCGCATTTAGAAAAGGCGCTGGAATTGGCCATGGACATTC
AAAATGACAGGTTTATCGCCATTTCTCTATTGAACATCGCGAACAGCTATGACAGATCAGGAGACGATCAGATGGCTGTA
GAACATTTCCAAAAAGCGGCGAAAGTAAGCAGAGAGAAAGTGCCTGATCTGCTTCCGAAAGTCTTGTTTGGATTAAGCTG
GACATTATGTAAAGCGGGCCAAACACAGAAGGCGTTTCAGTTCATAGAGGAAGGATTAGACCATATCACAGCACGTTCTC
ACAAATTTTATAAAGAATTGTTTCTGTTCTTGCAGGCCGTGTACAAGGAGACTGTTGATGAACGAAAAATTCATGATCTT
TTAAGCTATTTCGAAAAAAAGAACCTGCACGCTTACATTGAAGCATGTGCCCGGAGTGCTGCCGCTGTTTTTGAAAGCAG
CTGTCACTTTGAACAAGCCGCTGCGTTTTATCGGAAAGTGCTGAAAGCCCAAGAAGATATTCTAAAAGGAGAGTGTTTAT
ATGCCTATTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_7)

(222-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.957

100

0.41
  rapF Bacillus subtilis subsp. subtilis str. 168

40.053

100

0.402