Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   U7118_RS18295 Genome accession   NZ_CP141283
Coordinates   3367709..3368425 (-) Length   238 a.a.
NCBI ID   WP_258996546.1    Uniprot ID   -
Organism   Bacillus subtilis strain DKU_09     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3362709..3373425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U7118_RS18290 (U7118_18290) hypO 3366904..3367569 (-) 666 WP_014476144.1 NAD(P)H-dependent oxidoreductase -
  U7118_RS18295 (U7118_18295) treR 3367709..3368425 (-) 717 WP_258996546.1 trehalose operon repressor Regulator
  U7118_RS18300 (U7118_18300) treC 3368446..3370131 (-) 1686 WP_324271357.1 alpha,alpha-phosphotrehalase -
  U7118_RS18305 (U7118_18305) treP 3370202..3371614 (-) 1413 WP_014479163.1 PTS system trehalose-specific EIIBC component -
  U7118_RS18310 (U7118_18310) - 3371721..3372050 (+) 330 Protein_3607 spore germination protein -
  U7118_RS18315 (U7118_18315) - 3372046..3372250 (-) 205 Protein_3608 sodium:alanine symporter family protein -
  U7118_RS18320 (U7118_18320) yflB 3372375..3372767 (-) 393 WP_003233692.1 DUF1992 domain-containing protein -
  U7118_RS18325 (U7118_18325) - 3372786..3372923 (-) 138 WP_072592513.1 hypothetical protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27869.87 Da        Isoelectric Point: 7.5090

>NTDB_id=836779 U7118_RS18295 WP_258996546.1 3367709..3368425(-) (treR) [Bacillus subtilis strain DKU_09]
MKVNKFITIYKDIAQQIEGGRWKAEEILPSEHELTAQYGTSRETVRKALHMLAQNGYIQKIRGKGSVVLNREKMQFPVSG
LVSFKELARTLGKETKTTVHKFGLEPPSELIQKQLRANLDDDIWEVIRSRKIDGEHVILDKDYFFRKHVPHLTKEICENS
IYEYIEGELGLSISYAQKEIVAEPCTDEDRELLDLRGYDHMVVVRNYVFLEDTSLFQYTESRHRLDKFRFVDFARRGK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=836779 U7118_RS18295 WP_258996546.1 3367709..3368425(-) (treR) [Bacillus subtilis strain DKU_09]
ATGAAGGTGAATAAATTCATCACAATTTATAAAGACATCGCACAGCAAATTGAAGGCGGCCGATGGAAAGCGGAGGAGAT
TCTTCCGTCTGAACATGAGTTGACCGCACAGTACGGTACATCAAGAGAAACGGTCCGAAAGGCGCTTCATATGCTCGCGC
AAAACGGTTATATCCAGAAAATCAGGGGAAAAGGCTCCGTCGTGCTCAATCGTGAAAAAATGCAGTTTCCCGTTTCGGGC
CTTGTCAGCTTCAAGGAGCTCGCGCGAACGCTTGGCAAAGAAACGAAAACAACTGTACACAAATTCGGGCTGGAGCCTCC
GTCAGAGCTGATCCAAAAACAGCTCCGGGCCAATCTGGATGACGACATCTGGGAAGTCATCAGGTCTAGAAAGATTGACG
GGGAACATGTGATTTTGGACAAGGATTACTTTTTCAGAAAGCATGTCCCTCACCTGACGAAAGAAATTTGTGAAAACTCC
ATATATGAATATATAGAAGGAGAGCTCGGTCTTTCGATCAGTTACGCCCAAAAAGAAATTGTCGCCGAGCCGTGTACGGA
CGAGGACAGAGAGCTGCTCGATTTACGCGGCTATGACCATATGGTCGTGGTGAGAAACTACGTCTTTTTGGAGGATACCA
GTTTGTTTCAATATACGGAAAGCAGACACCGTCTCGACAAATTCCGATTTGTTGATTTTGCGCGGCGGGGGAAATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(8-68)

UTRA domain (UTRA)

(91-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.308

98.319

0.416