Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OH686_RS16110 Genome accession   NZ_CP126126
Coordinates   3446467..3447684 (-) Length   405 a.a.
NCBI ID   WP_289533913.1    Uniprot ID   -
Organism   Pseudomonas sp. SO81     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3441467..3452684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH686_RS16065 (OH686_16455) - 3441975..3442148 (-) 174 WP_289533898.1 DUF3094 domain-containing protein -
  OH686_RS16070 (OH686_16460) - 3442190..3442672 (-) 483 WP_289533900.1 MOSC domain-containing protein -
  OH686_RS16075 (OH686_16465) - 3442669..3443295 (-) 627 WP_289533903.1 DUF1780 domain-containing protein -
  OH686_RS16080 (OH686_16470) - 3443341..3443790 (+) 450 WP_289539005.1 GNAT family N-acetyltransferase -
  OH686_RS16085 (OH686_16475) - 3443787..3444482 (+) 696 WP_289533905.1 energy-coupling factor ABC transporter permease -
  OH686_RS16090 (OH686_16480) - 3444576..3444791 (+) 216 WP_289533907.1 hypothetical protein -
  OH686_RS16095 (OH686_16485) yacG 3444792..3444986 (-) 195 WP_137970913.1 DNA gyrase inhibitor YacG -
  OH686_RS16100 (OH686_16490) coaE 3444983..3445594 (-) 612 WP_289533909.1 dephospho-CoA kinase -
  OH686_RS16105 (OH686_16495) pilD 3445591..3446463 (-) 873 WP_289533911.1 A24 family peptidase Machinery gene
  OH686_RS16110 (OH686_16500) pilC 3446467..3447684 (-) 1218 WP_289533913.1 type II secretion system F family protein Machinery gene
  OH686_RS16115 (OH686_16505) pilB 3447691..3449391 (-) 1701 WP_289533915.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OH686_RS16120 (OH686_16510) - 3449568..3450047 (-) 480 WP_289533917.1 pilin -
  OH686_RS16125 (OH686_16515) tfpZ 3450367..3451116 (+) 750 WP_289533919.1 TfpX/TfpZ family type IV pilin accessory protein -
  OH686_RS16130 (OH686_16520) nadC 3451305..3452153 (-) 849 WP_289533921.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44320.17 Da        Isoelectric Point: 9.7358

>NTDB_id=836776 OH686_RS16110 WP_289533913.1 3446467..3447684(-) (pilC) [Pseudomonas sp. SO81]
MAEKALKTSTFSWEGTDKKGAKIKGEMGGQTPALVKAQLRKQGINPIKVRKKTTSIFSAGKKIKPMDIALFTRQMATMMK
AGVPLLSSFDIIGEGFDNPNMRKLVDELKQEVAAGNSFASSLRKKPLYFDDLYCNLVDAGEQAGALETLLDRVATYKEKT
EALKAKIKKAMTYPIAVLVVAVIVSAILLIKVVPQFEDVFKNFGAELPAFTQMVIGLSNVLQEWWFIVLIGMIGASFGFR
EIHRRSENFRNRLDKMVLKVPIVGDIIYKSSVARYARTLSTTFAAGVPLVEALDSVAGATGNVIFRDAVNKIKQDVSTGM
QLNFSMRTTGVFPSMALQMTAIGEESGALDDMLDKVASFYEAEVDNMVDNLTALMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=836776 OH686_RS16110 WP_289533913.1 3446467..3447684(-) (pilC) [Pseudomonas sp. SO81]
ATGGCGGAAAAAGCTCTCAAAACCAGCACCTTCAGCTGGGAAGGCACAGATAAAAAAGGCGCCAAGATTAAAGGTGAAAT
GGGCGGGCAGACCCCCGCTCTAGTCAAAGCTCAACTGCGCAAGCAGGGTATTAACCCGATCAAGGTACGCAAGAAAACCA
CTTCGATCTTTAGCGCAGGCAAGAAGATCAAGCCCATGGACATCGCCCTGTTCACTCGACAGATGGCGACCATGATGAAG
GCGGGCGTCCCCTTGCTCAGCTCCTTCGACATCATCGGCGAAGGCTTTGATAACCCCAACATGCGCAAGCTGGTTGACGA
GCTTAAGCAGGAAGTAGCAGCCGGTAACAGCTTTGCATCTTCGTTAAGAAAGAAGCCCCTCTATTTCGACGATCTTTATT
GCAACTTGGTTGATGCCGGCGAACAAGCAGGTGCGCTTGAAACGTTGCTCGACAGGGTAGCGACCTATAAAGAAAAGACC
GAGGCCCTGAAGGCCAAGATCAAAAAGGCAATGACTTACCCCATTGCCGTGCTCGTAGTAGCGGTCATCGTGTCGGCGAT
CCTGCTAATCAAAGTGGTGCCGCAGTTCGAAGACGTCTTCAAGAACTTTGGTGCGGAGCTTCCTGCCTTTACCCAGATGG
TTATTGGACTTTCCAATGTCCTGCAGGAGTGGTGGTTCATTGTATTGATAGGAATGATTGGCGCATCGTTCGGCTTCCGC
GAGATCCACAGGCGCTCGGAGAACTTCCGCAACAGGCTGGACAAGATGGTGCTAAAGGTGCCGATCGTGGGTGACATCAT
TTATAAATCTTCGGTCGCCCGTTACGCGCGCACTCTTTCAACCACGTTCGCAGCAGGCGTTCCGCTAGTGGAAGCACTTG
ACTCGGTGGCTGGCGCTACTGGCAACGTAATATTCCGAGATGCCGTGAATAAAATTAAACAGGACGTATCCACGGGCATG
CAGCTCAACTTCTCCATGCGCACCACCGGGGTATTCCCCAGCATGGCATTGCAGATGACAGCTATCGGTGAGGAGTCTGG
TGCTCTCGACGATATGCTGGACAAGGTAGCCAGCTTCTATGAAGCAGAAGTGGACAACATGGTGGACAACCTCACCGCCC
TCATGGAGCCAATGATCATGGCCGTACTGGGCGTACTCGTCGGCGGCCTTATCATTGCGATGTACCTCCCCATATTCCAA
CTCGGCCAAGTTGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

83.21

100

0.832
  pilC Acinetobacter baylyi ADP1

60.442

100

0.607
  pilC Acinetobacter baumannii D1279779

60

100

0.6
  pilC Legionella pneumophila strain ERS1305867

52.897

98.025

0.519
  pilG Neisseria gonorrhoeae MS11

45.522

99.259

0.452
  pilG Neisseria meningitidis 44/76-A

45.274

99.259

0.449
  pilC Vibrio cholerae strain A1552

41.235

100

0.412
  pilC Vibrio campbellii strain DS40M4

40.404

97.778

0.395