Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   U7118_RS16940 Genome accession   NZ_CP141283
Coordinates   3122064..3122807 (-) Length   247 a.a.
NCBI ID   WP_003233230.1    Uniprot ID   G4NRP4
Organism   Bacillus subtilis strain DKU_09     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3117064..3127807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U7118_RS16920 (U7118_16920) - 3117443..3118834 (+) 1392 WP_080478402.1 hypothetical protein -
  U7118_RS16925 (U7118_16925) sndC 3118907..3120097 (+) 1191 WP_069837400.1 N-acetyl amino acid acetylase SndC -
  U7118_RS16930 (U7118_16930) ecsC 3120115..3120825 (-) 711 WP_046160232.1 EcsC family protein -
  U7118_RS16935 (U7118_16935) ecsB 3120845..3122071 (-) 1227 WP_324271338.1 ABC transporter permease EcsB -
  U7118_RS16940 (U7118_16940) pptA 3122064..3122807 (-) 744 WP_003233230.1 ABC transporter ATP-binding protein EcsA Regulator
  U7118_RS16945 (U7118_16945) hinT 3123295..3123732 (+) 438 WP_003233231.1 HIT family protein -
  U7118_RS16950 (U7118_16950) - 3123841..3125193 (+) 1353 WP_014478984.1 IS1182 family transposase -
  U7118_RS16955 (U7118_16955) - 3125198..3125386 (+) 189 WP_324271339.1 hypothetical protein -
  U7118_RS16960 (U7118_16960) serC 3125440..3126519 (+) 1080 WP_014479338.1 3-phosphoserine/phosphohydroxythreonine transaminase -
  U7118_RS16965 (U7118_16965) trpP 3126644..3127162 (+) 519 WP_003233236.1 tryptophan transporter TrpP -
  U7118_RS16970 (U7118_16970) - 3127235..3127426 (-) 192 WP_003233238.1 hypothetical protein -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 27722.20 Da        Isoelectric Point: 5.9114

>NTDB_id=836771 U7118_RS16940 WP_003233230.1 3122064..3122807(-) (pptA) [Bacillus subtilis strain DKU_09]
MSLLSVKDLTGGYTRNPVLKNVSFTLEPNQIVGLIGLNGAGKSTTIRHIIGLMDPHKGSIELNGKTFAEDPEGYRSQFTY
IPETPVLYEELTLMEHLELTAMAYGLSKETMEKRLPPLLKEFRMEKRLKWFPAHFSKGMKQKVMIMCAFLAEPALYIIDE
PFLGLDPLAINALLERMNEAKKGGASVLMSTHILATAERYCDSFIILHNGEVRARGTLSELREQFGMKDAALDDLYLELT
KEDAGHE

Nucleotide


Download         Length: 744 bp        

>NTDB_id=836771 U7118_RS16940 WP_003233230.1 3122064..3122807(-) (pptA) [Bacillus subtilis strain DKU_09]
ATGTCTCTGCTATCGGTAAAAGACTTGACCGGCGGATATACAAGGAATCCGGTTTTAAAAAACGTATCATTCACCCTTGA
ACCGAATCAAATTGTCGGATTAATCGGGCTGAATGGTGCTGGTAAAAGTACAACAATCAGACACATCATCGGGCTGATGG
ACCCGCATAAAGGTTCAATCGAATTAAACGGTAAAACGTTTGCTGAGGATCCGGAAGGCTACCGTTCACAATTTACCTAT
ATACCTGAAACACCTGTTTTATACGAAGAATTGACGCTGATGGAGCATCTTGAACTAACAGCCATGGCATATGGACTGTC
AAAAGAAACGATGGAGAAAAGGCTGCCTCCGCTACTAAAGGAATTCCGAATGGAAAAGAGGCTGAAGTGGTTCCCGGCCC
ATTTTTCTAAAGGAATGAAGCAGAAGGTTATGATTATGTGCGCATTTTTGGCAGAGCCTGCGCTCTACATTATTGATGAG
CCTTTTCTAGGGCTTGATCCGCTTGCCATTAACGCGCTGCTTGAACGGATGAATGAAGCGAAAAAAGGCGGGGCGAGCGT
GCTGATGTCAACACACATTTTGGCAACGGCAGAACGCTATTGTGATTCGTTTATTATTTTACATAACGGCGAGGTGCGGG
CGCGCGGCACGCTGTCAGAGCTCAGAGAGCAGTTTGGAATGAAGGACGCGGCGCTGGACGATTTGTATCTTGAGCTTACA
AAGGAAGACGCTGGCCATGAATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(19-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NRP4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

56.904

96.761

0.551
  pptA Streptococcus thermophilus LMD-9

56.485

96.761

0.547