Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   U7118_RS15630 Genome accession   NZ_CP141283
Coordinates   2871762..2872898 (-) Length   378 a.a.
NCBI ID   WP_015252291.1    Uniprot ID   -
Organism   Bacillus subtilis strain DKU_09     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2866762..2877898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U7118_RS15590 (U7118_15590) xre 2867106..2867447 (+) 342 WP_003232719.1 HTH-type transcriptional regulator Xre -
  U7118_RS15595 (U7118_15595) xkdA 2867610..2868206 (+) 597 WP_003232721.1 ImmA/IrrE family metallo-endopeptidase -
  U7118_RS15600 (U7118_15600) xpdC 2868250..2869086 (-) 837 WP_003245071.1 manganese catalase family protein -
  U7118_RS15605 (U7118_15605) pghB 2869163..2869765 (-) 603 WP_014479547.1 poly-gamma-glutamate hydrolase family protein -
  U7118_RS15610 (U7118_15610) yjqA 2869870..2870247 (+) 378 WP_014479546.1 PH domain-containing protein -
  U7118_RS15615 (U7118_15615) xlyB 2870287..2871240 (-) 954 WP_014479545.1 N-acetylmuramoyl-L-alanine amidase -
  U7118_RS15620 (U7118_15620) yjpA 2871361..2871607 (+) 247 Protein_3090 YciI family protein -
  U7118_RS15625 (U7118_15625) phrA 2871638..2871772 (-) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  U7118_RS15630 (U7118_15630) rapC 2871762..2872898 (-) 1137 WP_015252291.1 response regulator aspartate phosphatase RapA Regulator
  U7118_RS15635 (U7118_15635) yjoB 2873043..2874314 (-) 1272 WP_003245490.1 ATPase YjoB -
  U7118_RS15640 (U7118_15640) bstD 2874463..2874927 (+) 465 WP_014479541.1 DinB family protein -
  U7118_RS15645 (U7118_15645) - 2875070..2876422 (-) 1353 WP_014478984.1 IS1182 family transposase -
  U7118_RS15650 (U7118_15650) yjnA 2876727..2877491 (+) 765 WP_095010685.1 sulfite exporter TauE/SafE family protein -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45046.23 Da        Isoelectric Point: 4.7218

>NTDB_id=836754 U7118_RS15630 WP_015252291.1 2871762..2872898(-) (rapC) [Bacillus subtilis strain DKU_09]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFEKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=836754 U7118_RS15630 WP_015252291.1 2871762..2872898(-) (rapC) [Bacillus subtilis strain DKU_09]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCATCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTAGAG
TTTTCAGAATTATTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAATTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCCGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AGGAAGGCAATCCCCGCCTGATCAGTTCCGCCCTATATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGAGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTCGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGAATCGGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)

Tetratricopeptide repeat (TPR_12)

(221-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.947

99.471

0.447
  rapF Bacillus subtilis subsp. subtilis str. 168

41.689

100

0.418