Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   U7118_RS13250 Genome accession   NZ_CP141283
Coordinates   2415845..2416276 (-) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain DKU_09     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 2410845..2421276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U7118_RS13240 (U7118_13240) hexA 2412329..2414905 (-) 2577 WP_014479821.1 DNA mismatch repair protein MutS Machinery gene
  U7118_RS13245 (U7118_13245) cotE 2415038..2415583 (-) 546 WP_003231833.1 outer spore coat protein CotE -
  U7118_RS13250 (U7118_13250) ymcA 2415845..2416276 (-) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  U7118_RS13255 (U7118_13255) miaB 2416278..2417807 (-) 1530 WP_014479820.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  U7118_RS13260 (U7118_13260) kbl 2417955..2419133 (-) 1179 WP_014479819.1 glycine C-acetyltransferase -
  U7118_RS13265 (U7118_13265) tdh 2419146..2420189 (-) 1044 WP_014479818.1 L-threonine 3-dehydrogenase -
  U7118_RS13270 (U7118_13270) spoVS 2420454..2420714 (-) 261 WP_003154135.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=836732 U7118_RS13250 WP_003231834.1 2415845..2416276(-) (ymcA) [Bacillus subtilis strain DKU_09]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=836732 U7118_RS13250 WP_003231834.1 2415845..2416276(-) (ymcA) [Bacillus subtilis strain DKU_09]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1