Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   U7118_RS11880 Genome accession   NZ_CP141283
Coordinates   2180184..2181959 (+) Length   591 a.a.
NCBI ID   WP_046160493.1    Uniprot ID   -
Organism   Bacillus subtilis strain DKU_09     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2175184..2186959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U7118_RS11830 (U7118_11830) yozC 2175611..2175814 (+) 204 WP_003231245.1 DUF6501 family protein -
  U7118_RS11835 (U7118_11835) yozO 2176170..2176514 (+) 345 WP_003220141.1 PH domain-containing protein -
  U7118_RS11840 (U7118_11840) - 2176608..2176841 (-) 234 WP_003231251.1 hypothetical protein -
  U7118_RS11845 (U7118_11845) - 2176846..2177109 (-) 264 WP_004399338.1 hypothetical protein -
  U7118_RS11850 (U7118_11850) yocM 2177176..2177649 (+) 474 WP_324271291.1 salt stress-responsive protein YocM -
  U7118_RS11855 (U7118_11855) - 2177639..2177863 (-) 225 WP_324271292.1 hypothetical protein -
  U7118_RS11860 (U7118_11860) - 2177941..2178273 (+) 333 WP_014480020.1 hypothetical protein -
  U7118_RS11865 (U7118_11865) stpP 2178348..2178839 (+) 492 WP_003231259.1 TraR/DksA family transcriptional regulator -
  U7118_RS11870 (U7118_11870) azoJ 2178992..2179618 (+) 627 WP_003231260.1 FMN-dependent NADH-azoreductase AzoJ -
  U7118_RS11880 (U7118_11880) recQ 2180184..2181959 (+) 1776 WP_046160493.1 DNA helicase RecQ Machinery gene
  U7118_RS11885 (U7118_11885) walN 2182207..2183070 (+) 864 WP_014480017.1 LysM peptidoglycan-binding and 3D domain-containing protein -
  U7118_RS11890 (U7118_11890) desR 2183678..2184277 (-) 600 WP_004399356.1 two-component system response regulator DesR -
  U7118_RS11895 (U7118_11895) desK 2184296..2185408 (-) 1113 WP_014480016.1 two-component sensor histidine kinase DesK -
  U7118_RS11900 (U7118_11900) desE 2185528..2186586 (-) 1059 WP_004399588.1 fatty acid desaturase DesE -

Sequence

Protein


Download         Length: 591 a.a.        Molecular weight: 67355.79 Da        Isoelectric Point: 6.2902

>NTDB_id=836726 U7118_RS11880 WP_046160493.1 2180184..2181959(+) (recQ) [Bacillus subtilis strain DKU_09]
MLHRAQSLLAHYFGYEKFRSGQDEAIRLVTEARQNTACIMPTGGGKSICYQIPALMFEGTTIVISPLISLMKDQVDALEE
AGINAAYINSTQSNQEIYERLNGLKEGAYKLFYITPERLTSTEFIRILQGIDVPLVAIDEAHCISQWGHDFRPSYRNIEI
LFRELHDKPVIMALTATATPEVHDDICKQLHIQKENTVYTGFSRENLTFKVVKGENKDRFIDEYVQNNRHEAGIVYTATR
KEADRIYERLKRNQVRAGRYHGGLADDERKEQQERFLNDELQVMVATSAFGMGIDKSNIRFVLHAQIPKDMESYYQEAGR
AGRDGLASECVLLFSPQDIMVQRFLIEQSEHEEKQKQDLKKLRQMVDYCHTEDCLQRFILMYFGEKEPNACGQCGNCTDT
RAAHDVTREAQMVLSCIIRMKERFGKTMVAQVLAGSKNKKVLENGFSDLSTYGILKHQSVGEISDFIEFLISDDFIRMSD
GTFPTLFVSSKGRNVLKGELSVARKEALKAAAITENDELFERLRMVRKEIAADQGVPPFVVFSDQTLKEMSGKQPVNDDE
LLSIKGVGEQKRAKYGRLFLQEIQAYARMTD

Nucleotide


Download         Length: 1776 bp        

>NTDB_id=836726 U7118_RS11880 WP_046160493.1 2180184..2181959(+) (recQ) [Bacillus subtilis strain DKU_09]
ATGTTACATAGAGCCCAATCCCTTCTGGCTCATTATTTTGGTTATGAGAAGTTTCGGAGCGGCCAAGATGAAGCGATCCG
CTTGGTGACGGAAGCGAGGCAAAATACGGCCTGCATTATGCCGACGGGAGGCGGCAAATCGATTTGCTATCAAATTCCAG
CATTAATGTTTGAAGGGACGACGATCGTCATATCACCGTTGATTTCCTTGATGAAGGATCAAGTTGATGCGTTAGAAGAA
GCGGGGATTAACGCCGCCTACATTAACAGCACACAATCCAATCAGGAAATTTATGAGAGGCTGAACGGACTCAAAGAAGG
GGCTTATAAGCTTTTTTACATTACACCAGAGCGACTAACGTCCACAGAGTTTATCCGGATTTTGCAGGGCATAGATGTTC
CTTTGGTCGCAATAGACGAGGCGCACTGTATTTCTCAATGGGGCCATGATTTCAGGCCAAGCTACAGGAATATTGAAATC
TTGTTCCGTGAATTACACGACAAGCCTGTCATCATGGCGTTAACAGCAACAGCCACACCCGAGGTTCATGATGATATTTG
CAAACAGCTGCATATTCAAAAAGAAAACACGGTATATACCGGATTTTCCCGAGAGAATTTAACCTTTAAAGTAGTAAAAG
GAGAAAATAAAGATCGGTTTATAGACGAATATGTGCAAAACAACAGGCATGAAGCAGGAATTGTCTATACAGCGACCAGA
AAAGAAGCTGATCGGATATATGAGAGATTGAAACGAAATCAGGTCAGGGCAGGCCGGTATCATGGAGGTTTGGCTGATGA
TGAGAGAAAAGAGCAGCAGGAAAGGTTTCTTAATGATGAGCTTCAAGTGATGGTGGCAACCTCTGCTTTTGGAATGGGTA
TTGATAAATCAAATATTAGATTTGTTCTGCATGCACAAATTCCGAAAGATATGGAAAGCTATTATCAAGAGGCAGGACGA
GCTGGACGGGACGGCCTTGCCAGTGAATGTGTTCTCCTGTTTTCACCGCAGGATATTATGGTCCAGCGCTTCTTAATTGA
GCAATCAGAACATGAAGAGAAACAAAAGCAGGATTTAAAAAAGCTGAGACAAATGGTCGACTACTGTCATACGGAAGATT
GTCTGCAGCGTTTTATCCTTATGTATTTCGGAGAAAAGGAGCCTAATGCGTGCGGACAGTGCGGAAACTGTACCGATACA
AGAGCGGCCCATGACGTGACGCGGGAGGCGCAAATGGTCTTATCTTGTATCATTCGCATGAAAGAACGGTTTGGCAAGAC
GATGGTTGCCCAGGTGCTTGCCGGCTCCAAAAATAAAAAAGTTCTTGAAAACGGCTTTTCAGACCTCTCAACATACGGGA
TATTAAAACACCAATCCGTTGGCGAAATCAGCGATTTTATCGAATTTCTTATTTCTGACGACTTCATCAGGATGTCAGAC
GGAACGTTTCCGACTCTTTTTGTCAGTAGTAAAGGAAGGAATGTGCTGAAAGGAGAATTATCAGTAGCGAGAAAAGAAGC
GTTAAAAGCGGCAGCGATTACTGAAAATGACGAGCTATTTGAACGATTGCGCATGGTTCGGAAAGAAATTGCGGCTGATC
AGGGTGTTCCGCCATTTGTTGTTTTCTCTGACCAAACGTTAAAAGAAATGTCAGGAAAACAGCCCGTAAATGATGATGAA
CTTTTGTCTATAAAAGGAGTCGGAGAACAAAAAAGAGCAAAATACGGCCGGCTTTTTTTACAAGAAATACAAGCTTATGC
AAGGATGACAGACTAA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(21-182)

RQC domain (RQC)

(403-507)

Helicase conserved C-terminal domain (Helicase_C)

(218-324)

HRDC domain (HRDC)

(518-583)

RecQ zinc-binding (RecQ_Zn_bind)

(336-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

99.323

100

0.993