Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QLQ22_RS24915 Genome accession   NZ_CP126116
Coordinates   5050750..5051283 (-) Length   177 a.a.
NCBI ID   WP_223438824.1    Uniprot ID   -
Organism   Metabacillus sp. CT-WN-B3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5045750..5056283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLQ22_RS24895 (QLQ22_24895) rplI 5046897..5047346 (-) 450 WP_223438820.1 50S ribosomal protein L9 -
  QLQ22_RS24900 (QLQ22_24900) - 5047343..5049322 (-) 1980 WP_223438821.1 DHH family phosphoesterase -
  QLQ22_RS24905 (QLQ22_24905) - 5049417..5050346 (-) 930 WP_223438822.1 YybS family protein -
  QLQ22_RS24910 (QLQ22_24910) rpsR 5050467..5050706 (-) 240 WP_223438823.1 30S ribosomal protein S18 -
  QLQ22_RS24915 (QLQ22_24915) ssbA 5050750..5051283 (-) 534 WP_223438824.1 single-stranded DNA-binding protein Machinery gene
  QLQ22_RS24920 (QLQ22_24920) rpsF 5051323..5051610 (-) 288 WP_070878903.1 30S ribosomal protein S6 -
  QLQ22_RS24925 (QLQ22_24925) ychF 5051723..5052823 (-) 1101 WP_223438825.1 redox-regulated ATPase YchF -
  QLQ22_RS24930 (QLQ22_24930) - 5053046..5053243 (-) 198 WP_223443756.1 DUF951 family protein -
  QLQ22_RS24935 (QLQ22_24935) - 5053240..5054133 (-) 894 WP_252207803.1 mechanosensitive ion channel family protein -
  QLQ22_RS24940 (QLQ22_24940) yyaC 5054313..5054936 (+) 624 WP_284015785.1 spore protease YyaC -
  QLQ22_RS24945 (QLQ22_24945) - 5054933..5055634 (-) 702 WP_284015786.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19251.93 Da        Isoelectric Point: 4.9528

>NTDB_id=836725 QLQ22_RS24915 WP_223438824.1 5050750..5051283(-) (ssbA) [Metabacillus sp. CT-WN-B3]
MMNRVVLVGRLTKDPELRYTPAGAAVATFTLAVNRAFTNQQGEREADFINCVVWRRPAENVANFLKKGSLAGVDGRLQSR
SYEDQTGKRVYVTEVVAESVQFLEPKSGSGNSGGGGGNNNYYGGGQGGQGGQQNPFSQNQNQNQNQNQRNQGRSNFDDDP
FANDGKPIDISDDDLPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=836725 QLQ22_RS24915 WP_223438824.1 5050750..5051283(-) (ssbA) [Metabacillus sp. CT-WN-B3]
ATGATGAATCGGGTTGTTTTAGTCGGCAGACTAACAAAAGATCCAGAACTGCGCTACACACCAGCTGGAGCTGCAGTTGC
TACTTTTACATTAGCTGTAAACCGTGCCTTCACAAACCAGCAGGGTGAAAGAGAAGCGGACTTCATTAACTGCGTCGTAT
GGCGCCGTCCGGCTGAAAATGTTGCAAATTTCCTTAAAAAAGGAAGTTTGGCAGGAGTAGATGGACGTCTTCAATCTCGC
AGCTATGAAGACCAGACTGGCAAACGTGTTTATGTAACTGAAGTGGTTGCTGAAAGCGTACAGTTTCTTGAACCTAAAAG
CGGAAGTGGAAACAGCGGCGGCGGTGGCGGAAACAACAATTATTATGGCGGCGGCCAAGGTGGACAAGGCGGTCAGCAAA
ATCCATTCAGCCAAAACCAAAATCAAAATCAAAATCAGAATCAGCGTAATCAAGGCCGTTCGAACTTTGATGACGATCCA
TTCGCAAATGATGGAAAGCCGATTGATATCTCTGATGATGACTTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

76.836

100

0.768
  ssb Latilactobacillus sakei subsp. sakei 23K

56.497

100

0.565
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

59.887

0.384
  ssb Glaesserella parasuis strain SC1401

36.464

100

0.373