Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   U7118_RS10820 Genome accession   NZ_CP141283
Coordinates   1998516..2000006 (+) Length   496 a.a.
NCBI ID   WP_015251799.1    Uniprot ID   -
Organism   Bacillus subtilis strain DKU_09     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1993516..2005006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U7118_RS10795 (U7118_10795) fmnP 1994762..1995334 (+) 573 WP_004399159.1 riboflavin transporter FmnP -
  U7118_RS10800 (U7118_10800) - 1995275..1995460 (-) 186 WP_250622518.1 hypothetical protein -
  U7118_RS10805 (U7118_10805) - 1995465..1996817 (-) 1353 WP_014478984.1 IS1182 family transposase -
  U7118_RS10810 (U7118_10810) fdxA 1996951..1997199 (-) 249 WP_003225461.1 ferredoxin -
  U7118_RS10815 (U7118_10815) gmmB 1997465..1998523 (+) 1059 WP_129134140.1 helix-turn-helix domain-containing protein -
  U7118_RS10820 (U7118_10820) recS 1998516..2000006 (+) 1491 WP_015251799.1 RecQ family ATP-dependent DNA helicase Machinery gene
  U7118_RS10825 (U7118_10825) ypbD 2000033..2000635 (+) 603 WP_014477208.1 CPBP family intramembrane glutamic endopeptidase -
  U7118_RS10830 (U7118_10830) claE 2000586..2001323 (+) 738 WP_046663505.1 LysM peptidoglycan-binding domain-containing protein -
  U7118_RS10835 (U7118_10835) ypbF 2001386..2001829 (+) 444 WP_003230531.1 YpbF family protein -
  U7118_RS10840 (U7118_10840) ypbG 2001916..2002695 (+) 780 WP_043857734.1 metallophosphoesterase -
  U7118_RS10845 (U7118_10845) mecB 2002854..2003438 (+) 585 WP_003230533.1 genetic competence negative regulator -
  U7118_RS10850 (U7118_10850) gudB 2003594..2004868 (+) 1275 WP_003230536.1 NAD-specific glutamate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 56509.05 Da        Isoelectric Point: 6.4518

>NTDB_id=836723 U7118_RS10820 WP_015251799.1 1998516..2000006(+) (recS) [Bacillus subtilis strain DKU_09]
MTKLQQTLYQFFGFTSFKKGQQDIIESILSGKDTIAMLPTGGGKSLCYQLPGYMLDGMVLIVSPLLSLMEDQVQQLKARG
EKRAAALNSMLNRQERQFVLEHIHRYKFLYLSPEALQSPYVLEKLKSVPISLFVIDEAHCISEWGHDFRPDYSKLGQLRK
KLGHPPVLALTATATKETLQDVMNLLELQHAVRHLNSVNRPNIALRVENAADTAEKIDRVIQLVENLQGPGIVYCPTRKW
AEELAGEIKSKTSSRADFYHGGLESGDRILIQQQFIHNQLDVICCTNAFGMGVDKPDIRYVIHFHLPQTAEAFMQEIGRA
GRDGKPSVSILLRAPGDFELQEQIIQMESVTAEEIADVIRVLEKTEERDERRLRDVLLQYGVGETQARMMIHLFMQGKTS
VELMKKEISYRMELKLEKMHRVSFLLQRDGCLRQALLTYFDESYEPDDGNLPCCSHCGFDLSLYEQKGERSKMAPLDSWS
SELHRIFSLQTVGELN

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=836723 U7118_RS10820 WP_015251799.1 1998516..2000006(+) (recS) [Bacillus subtilis strain DKU_09]
ATGACTAAATTACAGCAAACGTTATATCAGTTTTTTGGTTTTACTTCCTTTAAAAAAGGGCAGCAGGACATTATTGAAAG
CATACTCAGCGGGAAGGATACCATTGCAATGCTCCCGACTGGGGGAGGGAAATCGCTTTGCTACCAGCTGCCTGGTTATA
TGCTTGACGGCATGGTATTAATCGTTTCTCCACTGCTTTCTTTAATGGAGGATCAGGTGCAGCAGCTGAAAGCCCGGGGG
GAAAAGCGTGCTGCAGCTTTGAACAGCATGCTTAACAGGCAGGAAAGACAATTTGTTTTAGAACATATTCATCGATATAA
ATTTTTGTACTTGTCTCCTGAAGCTTTACAGTCTCCATATGTATTGGAAAAATTGAAAAGCGTCCCGATCAGCCTATTTG
TTATTGACGAAGCGCATTGTATTTCTGAATGGGGACACGACTTCAGGCCTGATTATTCAAAGCTCGGACAGCTGAGAAAA
AAACTTGGACACCCGCCCGTTCTGGCATTGACCGCCACGGCTACAAAGGAAACGCTGCAAGATGTCATGAACCTGCTGGA
GCTGCAGCATGCTGTACGCCATCTCAACTCAGTCAACCGCCCAAACATCGCACTGAGGGTTGAAAATGCGGCGGATACTG
CCGAAAAAATAGATAGGGTCATTCAGCTGGTTGAAAACCTGCAAGGTCCGGGAATTGTTTATTGTCCGACACGGAAATGG
GCCGAGGAATTAGCGGGTGAAATTAAAAGCAAAACGAGCAGCAGAGCCGACTTTTACCATGGCGGTTTGGAGTCAGGGGA
CAGGATTTTAATTCAGCAGCAGTTTATTCATAACCAGCTTGATGTGATATGTTGTACGAATGCGTTTGGAATGGGTGTCG
ATAAACCCGATATCAGATATGTGATTCATTTTCACCTCCCGCAGACGGCAGAAGCTTTTATGCAGGAAATCGGCAGAGCG
GGCCGCGACGGAAAGCCGAGTGTCAGCATTTTGCTGCGGGCGCCAGGGGATTTTGAATTGCAGGAACAGATTATCCAGAT
GGAGAGTGTCACAGCTGAAGAAATCGCCGACGTGATCCGTGTGCTAGAGAAGACGGAGGAGCGGGATGAGAGAAGGCTTC
GTGACGTATTACTTCAGTATGGCGTCGGAGAGACACAGGCCCGTATGATGATTCATCTCTTTATGCAGGGGAAAACATCA
GTTGAACTGATGAAGAAAGAAATTTCATATCGCATGGAGCTGAAGCTGGAAAAAATGCACCGTGTATCATTTTTGCTTCA
GCGTGATGGCTGTTTAAGGCAGGCACTATTAACCTACTTTGATGAATCATACGAGCCTGATGACGGAAACCTCCCGTGCT
GTTCACATTGCGGTTTTGATTTATCCTTGTATGAACAAAAAGGGGAACGGAGTAAAATGGCGCCATTAGACAGCTGGAGT
TCGGAATTGCACCGGATATTCAGCTTGCAGACTGTAGGTGAGCTGAACTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-323)

DEAD/DEAH box helicase (DEAD)

(20-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

99.798

100

0.998