Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   QLQ22_RS17450 Genome accession   NZ_CP126116
Coordinates   3525626..3527350 (-) Length   574 a.a.
NCBI ID   WP_284015271.1    Uniprot ID   -
Organism   Metabacillus sp. CT-WN-B3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3520626..3532350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLQ22_RS17425 (QLQ22_17425) - 3520673..3520819 (+) 147 WP_284015269.1 YycC family protein -
  QLQ22_RS17430 (QLQ22_17430) - 3521421..3521861 (-) 441 WP_284015270.1 cell wall hydrolase -
  QLQ22_RS17435 (QLQ22_17435) - 3522331..3522489 (-) 159 WP_223436586.1 YjcZ family sporulation protein -
  QLQ22_RS17440 (QLQ22_17440) spo0A 3523017..3523808 (-) 792 WP_223436589.1 sporulation transcription factor Spo0A -
  QLQ22_RS17445 (QLQ22_17445) spoIVB 3524111..3525400 (-) 1290 WP_223436591.1 SpoIVB peptidase -
  QLQ22_RS17450 (QLQ22_17450) recN 3525626..3527350 (-) 1725 WP_284015271.1 DNA repair protein RecN Machinery gene
  QLQ22_RS17455 (QLQ22_17455) argR 3527382..3527831 (-) 450 WP_223436595.1 transcriptional regulator ArgR -
  QLQ22_RS17460 (QLQ22_17460) - 3527959..3528801 (-) 843 WP_252207176.1 TlyA family RNA methyltransferase -
  QLQ22_RS17465 (QLQ22_17465) dxs 3528805..3530697 (-) 1893 WP_223436599.1 1-deoxy-D-xylulose-5-phosphate synthase -
  QLQ22_RS17470 (QLQ22_17470) - 3531004..3531888 (-) 885 WP_284015272.1 polyprenyl synthetase family protein -
  QLQ22_RS17475 (QLQ22_17475) - 3531888..3532121 (-) 234 WP_070876663.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 574 a.a.        Molecular weight: 64642.76 Da        Isoelectric Point: 4.9628

>NTDB_id=836701 QLQ22_RS17450 WP_284015271.1 3525626..3527350(-) (recN) [Metabacillus sp. CT-WN-B3]
MLAELSIKNFAIIESLTVSFEKGLTVLTGETGAGKSIIIDAVHLLVGGRGSSEFVRYGEKRAELEGLFLLDDEKHPCIDR
CNDFGIDTSDGMIVLRRDISSSGKSICRINGKLVTIGILREIGQMIIDIHGQHDNQELMNEENHWKLLDQFGSGKINHAL
ASYREIYNTYAKLVKKIKQLSENEQEMAHRLDLIQFQLEEIEKADLKIKEDERLMEEKSQISNFEKIFESLQNSYNALHG
EQRGLDYIGHSMSQLEEVSAINDSLKEMSETISNCYYMLEDLSFQIRNELDQLEFDPERLNEIETRLGEITHLKRKYGQD
VEEILEYAAAIEEEIDTIQNRDSHLFKLKNELDSLVKDLIVEAKNVTAVRKKSAAELTKQIQRELKELYMEKTKFEVVFS
VRQGSKDAPQIDGVPAKFGENGVDETEFYISTNPGEPLKPLSKIASGGELSRIMLAMKSIFSKHQGVTSIIFDEVDTGVS
GRVAQAIAEKIYKVSVGSQVLCITHLPQVAAMADTHLFISKETVKGRTKTSVKPLLEEEKIKEVGRMIAGVEVTDLTKQH
AKELLALADTVKSL

Nucleotide


Download         Length: 1725 bp        

>NTDB_id=836701 QLQ22_RS17450 WP_284015271.1 3525626..3527350(-) (recN) [Metabacillus sp. CT-WN-B3]
GTGTTAGCGGAACTTTCAATAAAAAACTTTGCAATCATTGAATCATTGACTGTCTCCTTTGAGAAAGGGCTGACAGTACT
AACTGGAGAAACCGGAGCAGGGAAATCCATTATCATTGATGCCGTCCATTTGCTTGTCGGCGGAAGAGGCTCATCTGAAT
TTGTTCGTTACGGGGAGAAACGTGCTGAATTAGAGGGTCTTTTTTTACTTGATGATGAAAAACATCCATGTATAGACAGA
TGCAATGATTTTGGAATCGACACGAGCGACGGCATGATTGTTTTAAGACGCGACATTTCATCCTCGGGAAAAAGCATCTG
CCGTATTAACGGGAAGCTTGTAACCATTGGAATTCTCAGGGAAATCGGACAAATGATTATTGATATTCATGGACAGCATG
ACAATCAGGAGCTTATGAACGAAGAAAATCACTGGAAGCTTCTCGATCAGTTCGGTTCCGGAAAAATTAATCATGCTCTT
GCTTCATACAGAGAAATTTACAATACATATGCTAAGCTCGTGAAAAAAATAAAACAGCTGTCTGAAAATGAACAGGAAAT
GGCCCACAGGCTTGACTTGATTCAATTTCAGCTTGAAGAAATAGAAAAGGCAGATTTGAAAATCAAAGAAGATGAGCGGC
TTATGGAGGAAAAAAGCCAAATATCCAACTTTGAAAAAATATTTGAATCACTTCAAAACAGCTATAATGCCTTGCACGGC
GAGCAAAGAGGGCTAGATTATATTGGACATTCCATGAGTCAATTAGAAGAGGTATCAGCTATTAATGACTCGCTGAAAGA
AATGTCCGAAACCATTTCGAACTGCTATTACATGCTTGAGGATTTATCCTTTCAGATTCGAAATGAGCTCGATCAATTGG
AATTTGATCCAGAGCGGTTGAATGAAATTGAAACAAGACTTGGCGAAATTACGCATCTCAAAAGAAAATACGGACAGGAT
GTAGAAGAAATCCTTGAATATGCAGCAGCAATTGAAGAGGAAATAGATACAATCCAAAACCGTGACAGTCATTTGTTCAA
GCTGAAAAACGAGTTAGACAGCCTTGTGAAAGATCTTATCGTTGAAGCAAAGAACGTGACAGCCGTCCGGAAAAAAAGTG
CTGCTGAGCTGACGAAGCAAATTCAGCGGGAGCTGAAAGAATTATATATGGAAAAAACAAAATTTGAAGTTGTTTTTAGT
GTTAGGCAAGGCAGCAAGGATGCACCTCAAATTGATGGTGTCCCTGCGAAATTTGGTGAAAATGGTGTGGATGAAACGGA
ATTTTACATATCGACAAATCCTGGAGAACCATTAAAGCCGCTTTCTAAAATTGCTTCTGGCGGAGAGCTTTCAAGAATCA
TGCTTGCAATGAAAAGCATCTTTTCAAAGCATCAGGGTGTCACCTCAATTATTTTTGATGAAGTGGATACAGGTGTCAGC
GGCCGTGTCGCCCAGGCGATTGCAGAAAAAATCTATAAAGTATCTGTCGGTTCGCAAGTGCTTTGTATTACACATCTTCC
GCAAGTTGCGGCAATGGCCGATACACACCTTTTCATTTCAAAAGAAACAGTTAAAGGAAGAACCAAAACAAGCGTAAAAC
CTCTTTTAGAAGAGGAAAAAATAAAAGAAGTCGGCAGGATGATTGCCGGCGTTGAAGTAACGGATTTAACAAAACAGCAT
GCAAAAGAACTGCTGGCTCTTGCTGATACGGTCAAGAGCCTGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

70.087

100

0.702