Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   QLQ22_RS09320 Genome accession   NZ_CP126116
Coordinates   1879801..1880184 (+) Length   127 a.a.
NCBI ID   WP_284016777.1    Uniprot ID   -
Organism   Metabacillus sp. CT-WN-B3     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1874801..1885184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLQ22_RS09295 (QLQ22_09295) - 1875938..1877047 (+) 1110 WP_284016535.1 GerAB/ArcD/ProY family transporter -
  QLQ22_RS09300 (QLQ22_09300) - 1877044..1878165 (+) 1122 WP_284016536.1 Ger(x)C family spore germination protein -
  QLQ22_RS09305 (QLQ22_09305) - 1878264..1878626 (+) 363 WP_223441575.1 cytochrome-c oxidase -
  QLQ22_RS09310 (QLQ22_09310) - 1878708..1878842 (-) 135 WP_275976749.1 hypothetical protein -
  QLQ22_RS09315 (QLQ22_09315) - 1878910..1879464 (-) 555 WP_223441577.1 GNAT family protein -
  QLQ22_RS09320 (QLQ22_09320) nucA/comI 1879801..1880184 (+) 384 WP_284016777.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  QLQ22_RS09325 (QLQ22_09325) comJ 1880208..1880621 (+) 414 WP_223441582.1 competence protein ComJ -
  QLQ22_RS09330 (QLQ22_09330) - 1880832..1882736 (+) 1905 WP_223441584.1 heavy metal translocating P-type ATPase -
  QLQ22_RS09335 (QLQ22_09335) - 1882771..1882974 (-) 204 WP_223441586.1 hypothetical protein -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 13780.14 Da        Isoelectric Point: 4.0277

>NTDB_id=836694 QLQ22_RS09320 WP_284016777.1 1879801..1880184(+) (nucA/comI) [Metabacillus sp. CT-WN-B3]
MALAGLLEGLAPGKAAAYSAYDEILYFLMDRYPETGDHVRDAIAAGHSDVCTIERDGAEERREESLAGIPTETGYDRDEW
PMAMCEEGGAGASVRYVTPSDNRGASAWVGNQLENYPDGTRVLFITD

Nucleotide


Download         Length: 384 bp        

>NTDB_id=836694 QLQ22_RS09320 WP_284016777.1 1879801..1880184(+) (nucA/comI) [Metabacillus sp. CT-WN-B3]
ATGGCACTCGCAGGTTTACTTGAGGGACTGGCTCCCGGGAAAGCTGCTGCTTATTCGGCCTATGATGAAATCTTATATTT
TCTTATGGATAGGTACCCTGAAACAGGAGATCATGTCAGGGACGCCATTGCTGCCGGGCACTCCGATGTGTGTACGATTG
AACGTGATGGAGCAGAGGAGAGAAGGGAAGAGAGCCTTGCCGGAATCCCTACTGAGACTGGATACGATCGAGATGAATGG
CCGATGGCTATGTGCGAAGAAGGAGGAGCAGGTGCATCAGTCCGCTATGTCACTCCATCTGATAATCGCGGAGCAAGTGC
GTGGGTCGGCAATCAGCTTGAGAATTATCCTGACGGCACGAGGGTTTTATTTATCACTGACTGA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(33-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

61.789

96.85

0.598