Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   QNH48_RS22120 Genome accession   NZ_CP126115
Coordinates   4487569..4489269 (-) Length   566 a.a.
NCBI ID   WP_283952037.1    Uniprot ID   A0AA95MW07
Organism   Neobacillus sp. YX16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4482569..4494269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH48_RS22095 (QNH48_22095) - 4483879..4484112 (+) 234 WP_283952033.1 DUF2627 domain-containing protein -
  QNH48_RS22100 (QNH48_22100) - 4484123..4484851 (-) 729 WP_283952034.1 glycerophosphodiester phosphodiesterase -
  QNH48_RS22105 (QNH48_22105) - 4484888..4485022 (+) 135 WP_090758317.1 YycC family protein -
  QNH48_RS22110 (QNH48_22110) spo0A 4485093..4485884 (-) 792 WP_283952035.1 sporulation transcription factor Spo0A -
  QNH48_RS22115 (QNH48_22115) spoIVB 4486171..4487460 (-) 1290 WP_283952036.1 SpoIVB peptidase -
  QNH48_RS22120 (QNH48_22120) recN 4487569..4489269 (-) 1701 WP_283952037.1 DNA repair protein RecN Machinery gene
  QNH48_RS22125 (QNH48_22125) argR 4489285..4489734 (-) 450 WP_095247167.1 transcriptional regulator ArgR -
  QNH48_RS22130 (QNH48_22130) - 4489882..4490721 (-) 840 WP_283952038.1 TlyA family RNA methyltransferase -
  QNH48_RS22135 (QNH48_22135) dxs 4490725..4492617 (-) 1893 WP_283952039.1 1-deoxy-D-xylulose-5-phosphate synthase -
  QNH48_RS22140 (QNH48_22140) - 4492765..4493658 (-) 894 WP_283952040.1 polyprenyl synthetase family protein -
  QNH48_RS22145 (QNH48_22145) - 4493662..4493895 (-) 234 WP_095247163.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 566 a.a.        Molecular weight: 64246.26 Da        Isoelectric Point: 5.3669

>NTDB_id=836649 QNH48_RS22120 WP_283952037.1 4487569..4489269(-) (recN) [Neobacillus sp. YX16]
MLSELSIKNFAIIEALAISFDKGLTVLTGETGAGKSIIIDAIHLLVGGRGSAEFVRHGEDKAEIEGLFQIDEHHPVFSKA
FEFGIEIEEGMVVLRRDISRTGKSVCRINGKLVTISTLREVGSTLVDIHSQHEHQDLMDESRHLLLLDQFGFEEISRSQA
EYQEVFHRYEQTFHKLKSLSENEQKTAHRLDLIQFQFDEIQNANLKLNEDEQLFEEKRKLVNFERVFDAVQSSYNALTGE
QKGLDWISMVMGQLEDAAALDSAYKELYESVMNSFYLLEDASRTLRNELDELEYDPQRLNAIEERLNEINQLKRKYGKTI
EEILEYAAKIEEEIETLQNKETHIGQLEKQLASIKKDLSLEAKQLTELRKRWAGKLTKLIHNELKELYMAKTVFEIRFES
VLPHFTKNGVDHVEYFISTNPGEPLKPLSKIASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGVSGRVAQSIAEKIYK
VAVDSQVLCISHLPQVAAMADTHLFISKVTKGGRTKTSVSPLGVEEKIREIGRMISGVEITDLTKKHAEELLFLASENKK
IEKLPN

Nucleotide


Download         Length: 1701 bp        

>NTDB_id=836649 QNH48_RS22120 WP_283952037.1 4487569..4489269(-) (recN) [Neobacillus sp. YX16]
ATGTTATCAGAATTATCGATTAAGAACTTTGCCATTATTGAGGCCCTTGCCATTTCGTTTGACAAGGGCTTGACTGTTTT
AACAGGAGAAACGGGTGCAGGAAAATCAATAATTATTGACGCAATTCATCTGCTGGTAGGAGGCCGAGGCTCTGCTGAGT
TTGTCAGACATGGGGAAGATAAGGCAGAAATTGAGGGTCTATTTCAAATAGATGAGCACCATCCGGTGTTTTCAAAAGCA
TTTGAGTTCGGAATAGAAATTGAAGAGGGAATGGTTGTTTTACGAAGGGATATTTCGCGGACTGGCAAAAGTGTTTGTAG
AATCAATGGTAAGCTTGTGACCATTTCAACTCTACGGGAAGTGGGTTCTACCTTAGTTGATATACATAGTCAGCATGAAC
ACCAAGATTTAATGGATGAGAGCAGGCATCTACTATTACTTGACCAATTTGGCTTTGAGGAAATTTCGCGTTCTCAAGCA
GAATACCAAGAAGTGTTTCATCGCTATGAACAGACTTTTCATAAACTTAAGTCTTTAAGTGAGAATGAGCAAAAAACAGC
ACATCGATTAGATTTAATTCAATTTCAATTTGACGAGATTCAAAATGCAAATTTAAAGCTTAATGAAGATGAGCAGCTTT
TTGAAGAAAAAAGAAAGCTTGTGAATTTTGAGCGTGTTTTCGATGCTGTTCAATCCAGTTATAATGCCCTAACTGGAGAA
CAAAAGGGGCTAGATTGGATTAGTATGGTAATGGGACAACTGGAGGACGCTGCAGCTTTGGATTCCGCCTATAAAGAATT
ATATGAATCCGTCATGAATAGCTTTTATCTATTAGAAGATGCTTCCCGCACATTGAGAAATGAATTAGATGAGTTAGAAT
ATGATCCACAGCGGTTAAATGCAATCGAAGAAAGATTAAATGAAATTAATCAGTTAAAACGGAAGTATGGAAAAACAATT
GAAGAAATTTTAGAATATGCAGCGAAAATTGAAGAAGAAATAGAAACATTGCAAAATAAAGAAACACATATAGGGCAATT
AGAGAAACAACTAGCCTCCATTAAAAAGGATTTAAGTCTTGAAGCCAAACAGCTGACGGAGCTCCGAAAACGCTGGGCTG
GGAAGCTGACAAAATTAATTCATAATGAATTGAAAGAACTATACATGGCAAAAACAGTTTTTGAAATCCGCTTTGAATCT
GTCTTGCCACATTTTACAAAAAACGGTGTGGATCACGTGGAGTATTTTATTTCAACAAATCCAGGTGAACCCTTAAAGCC
ATTATCAAAAATTGCCTCTGGCGGTGAACTATCGAGGATAATGCTAGCACTTAAAAGTATTTTTTCGAAACACCAAGGAG
TTACTTCCATTATTTTTGATGAGGTGGATACTGGCGTAAGCGGCAGGGTAGCACAATCGATAGCTGAAAAAATTTATAAA
GTAGCTGTCGATTCACAGGTATTATGTATTTCCCATTTGCCACAAGTAGCTGCAATGGCAGATACTCATTTGTTTATTTC
TAAAGTGACAAAAGGCGGGCGAACCAAAACTTCGGTCAGTCCACTCGGTGTAGAAGAAAAAATAAGGGAAATTGGCCGAA
TGATTTCTGGCGTTGAAATTACCGATTTAACGAAAAAACATGCTGAAGAATTGCTGTTTTTAGCATCTGAAAATAAAAAA
ATTGAAAAGCTTCCCAATTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

60.908

100

0.617