Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   U5640_RS34900 Genome accession   NZ_CP141223
Coordinates   7599173..7599814 (+) Length   213 a.a.
NCBI ID   WP_340381712.1    Uniprot ID   -
Organism   Streptomyces sp. SS7     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 7594173..7604814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  - vraR 7599173..7599814 (+) 642 - - Regulator

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23012.23 Da        Isoelectric Point: 5.1598

>NTDB_id=836643 U5640_RS34900 WP_340381712.1 7599173..7599814(+) (vraR) [Streptomyces sp. SS7]
MADAIKVLLVDDHQVVRRGLRTFLEVQDDIEVVGEAADGAEGVQRAEELRPDVVLMDVKMPGTDGIEALRRLRELDNPAR
VLIVTSFTEQRTVVPALRAGAAGYVYKDVDPDALAGAIRSVHAGHILLQPEVAGALLSQEESNSGQGRGGSLTEREREVL
GLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGMAG

Nucleotide


Download         Length: 642 bp        

>NTDB_id=836643 U5640_RS34900 WP_340381712.1 7599173..7599814(+) (vraR) [Streptomyces sp. SS7]
GTGGCTGACGCAATCAAGGTGCTGCTCGTCGACGACCACCAGGTCGTCCGCCGCGGACTGCGCACCTTCCTCGAGGTCCA
GGACGACATCGAGGTCGTCGGCGAGGCCGCCGACGGCGCCGAGGGAGTCCAGCGCGCCGAGGAACTCCGGCCCGACGTCG
TCCTCATGGACGTCAAGATGCCCGGCACCGACGGCATCGAGGCCCTGCGCCGCCTGCGCGAACTCGACAACCCCGCGCGC
GTGCTGATCGTCACCAGCTTCACCGAACAGCGCACGGTGGTCCCCGCCCTGCGCGCCGGCGCCGCCGGATACGTCTACAA
GGACGTGGACCCCGACGCCCTCGCCGGCGCCATCCGCTCGGTCCACGCCGGCCACATCCTGCTCCAGCCGGAGGTCGCCG
GCGCCCTGCTCTCCCAGGAGGAGAGCAACTCCGGCCAGGGCAGAGGCGGTTCCCTCACGGAACGGGAGCGCGAGGTGCTC
GGCCTGATAGCGGACGGCCGCTCCAACCGCGAGATCGCCCGCGCCCTGGTCCTCTCCGAGAAGACCGTCAAGACCCACGT
CTCGAACATCCTGATGAAACTCGACCTCGCCGACCGCACCCAGGCCGCGCTGTGGGCCGTACGGCACGGGATGGCCGGCT
GA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(7-118)

Bacterial regulatory proteins, luxR family (GerE)

(151-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.755

99.531

0.455
  degU Bacillus subtilis subsp. subtilis str. 168

38.462

100

0.399