Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   U5640_RS29780 Genome accession   NZ_CP141223
Coordinates   6437544..6438833 (+) Length   429 a.a.
NCBI ID   WP_340379220.1    Uniprot ID   -
Organism   Streptomyces sp. SS7     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 6432544..6443833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  - clpX 6437544..6438833 (+) 1290 - - Regulator

Sequence

Protein


Download         Length: 429 a.a.        Molecular weight: 47010.83 Da        Isoelectric Point: 4.7866

>NTDB_id=836635 U5640_RS29780 WP_340379220.1 6437544..6438833(+) (clpX) [Streptomyces sp. SS7]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEELPKPREIYEFLEGYVVGQEA
AKKSLSVAVYNHYKRVQAGENGGAQSREDAIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFAGLEKIIESRAGAKGIGFGATIRSKRELEAKDQFEDVMPEDLVKFGMIPEFIGRLPVITSVHNLDR
EALLQILVEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGARGLRAIMEEVLMSVMYEVPSRKDVARVVIT
ADVVHSNVNPTLIPREQRGGRGPGEQKTA

Nucleotide


Download         Length: 1290 bp        

>NTDB_id=836635 U5640_RS29780 WP_340379220.1 6437544..6438833(+) (clpX) [Streptomyces sp. SS7]
GTGGCACGCATCGGTGACGGCGGCGATCTGCTCAAGTGCTCGTTCTGCGGCAAGAGCCAGAAGCAGGTCAAGAAGCTCAT
CGCAGGGCCCGGTGTGTACATCTGCGACGAGTGCATCGATCTCTGCAACGAGATCATCGAGGAGGAACTCGCCGAGACGA
GCGAGGTGCGCTGGGAGGAACTCCCCAAGCCCCGCGAGATCTACGAGTTCCTGGAGGGGTACGTCGTCGGCCAGGAGGCC
GCGAAGAAGTCCCTCTCGGTCGCGGTGTACAACCACTACAAGCGGGTCCAGGCCGGTGAGAACGGCGGAGCCCAGAGCCG
CGAGGACGCCATCGAGTTGGCGAAGTCCAACATCCTCCTGCTCGGCCCCACGGGCTCGGGCAAGACCCTCCTCGCACAGA
CCCTCGCCCGCATGCTGAACGTGCCGTTCGCCATCGCCGACGCCACGGCGCTGACCGAGGCGGGGTACGTCGGCGAGGAC
GTCGAGAACATCCTCCTCAAGCTCATCCAGGCCGCCGACTACGACGTCAAGAAGGCCGAGACCGGGATCATCTACATCGA
TGAGATCGACAAGGTCGCCCGGAAGAGCGAAAACCCCTCCATCACGCGCGACGTGAGCGGGGAGGGCGTGCAGCAGGCGC
TGCTGAAGATCCTGGAGGGCACCACGGCCTCCGTCCCGCCGCAGGGCGGACGCAAGCACCCGCACCAGGAGTTCATCCAG
ATCGACACGACGAACGTGCTGTTCATCGTGGGCGGTGCCTTCGCGGGCCTGGAGAAGATCATCGAGTCCCGGGCCGGCGC
CAAGGGCATCGGCTTCGGCGCGACGATCCGCTCCAAGCGGGAGCTGGAGGCCAAGGACCAGTTCGAGGACGTCATGCCCG
AGGACCTGGTGAAGTTCGGCATGATCCCGGAGTTCATCGGCCGCCTCCCCGTCATCACCAGCGTCCACAACCTCGACCGC
GAGGCCCTGCTCCAGATCCTGGTCGAGCCGCGCAACGCGCTGGTCAAGCAGTACCAGCGGCTGTTCGAACTCGACGGCGT
GGAGCTGGACTTCGAGCGCGAGGCGCTGGAGGCCATCGCGGACCAGGCCATCCTCCGCCAGACCGGCGCCCGCGGTCTGC
GCGCCATCATGGAGGAGGTCCTGATGTCGGTGATGTACGAGGTCCCGTCCCGCAAGGACGTGGCCCGCGTGGTCATCACG
GCCGACGTCGTCCACTCCAACGTCAACCCGACCCTGATCCCGCGCGAGCAGCGCGGCGGCCGGGGCCCGGGCGAGCAGAA
GACGGCGTAG

Domains

Predicted by InterProScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(318-395)

AAA domain (Cdc48 subfamily) (AAA_2)

(115-312)

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

62.687

93.706

0.587
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.369

96.037

0.522