Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QNH48_RS00665 Genome accession   NZ_CP126115
Coordinates   138313..139695 (+) Length   460 a.a.
NCBI ID   WP_283953379.1    Uniprot ID   A0AA95SN60
Organism   Neobacillus sp. YX16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 133313..144695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH48_RS00645 (QNH48_00645) - 133652..134113 (+) 462 WP_283953375.1 CtsR family transcriptional regulator -
  QNH48_RS00650 (QNH48_00650) - 134144..134692 (+) 549 WP_283953376.1 UvrB/UvrC motif-containing protein -
  QNH48_RS00655 (QNH48_00655) - 134694..135767 (+) 1074 WP_283953377.1 protein arginine kinase -
  QNH48_RS00660 (QNH48_00660) clpC 135781..138222 (+) 2442 WP_283953378.1 ATP-dependent protease ATP-binding subunit ClpC -
  QNH48_RS00665 (QNH48_00665) radA 138313..139695 (+) 1383 WP_283953379.1 DNA repair protein RadA Machinery gene
  QNH48_RS00670 (QNH48_00670) disA 139699..140772 (+) 1074 WP_283953380.1 DNA integrity scanning diadenylate cyclase DisA -
  QNH48_RS00675 (QNH48_00675) - 140957..142051 (+) 1095 WP_283953381.1 PIN/TRAM domain-containing protein -
  QNH48_RS00680 (QNH48_00680) ispD 142075..142764 (+) 690 WP_283953382.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  QNH48_RS00685 (QNH48_00685) ispF 142767..143243 (+) 477 WP_283953383.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49896.46 Da        Isoelectric Point: 7.3694

>NTDB_id=836624 QNH48_RS00665 WP_283953379.1 138313..139695(+) (radA) [Neobacillus sp. YX16]
MAKRKTKFMCQDCGYESPKWMGKCPGCGAWNKMVEEVEVTGGNRRGAFAHSQGGSTLLTKPTPITAIETLTEPRILTDMN
ELNRVLGGGVVKGSLVLIGGDPGIGKSTLLLQVSSQLANKGNQVLYISGEESLRQTKLRAERLGIKSENLLVYSETNLEE
INRTIEETNPSFVIIDSIQTVFHPEVTSAPGSVSQVRECTSELMRIGKTKGIAIFIVGHVTKEGSIAGPRLLEHMVDTVL
YFEGERHHTYRILRAVKNRFGSTNEMGIFEMKEFGLDEVANPSEIFLEERSQGAAGSTVVASMEGTRPVLVEIQALISPT
SFGNPRRMATGIDHNRVPLLMAVLEKRMGLLLQNQDAYLKVAGGVKLDEPAIDLAIAVSIASSFRDKPTRATDCIIGEVG
LTGEVRRVSRIEQRVQEAAKLGFERVILPANNLSGWQGPKGVELIGVSTVAEALKAALGV

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=836624 QNH48_RS00665 WP_283953379.1 138313..139695(+) (radA) [Neobacillus sp. YX16]
ATGGCAAAACGAAAGACGAAGTTTATGTGTCAGGACTGTGGGTATGAATCTCCGAAGTGGATGGGAAAATGTCCAGGCTG
CGGAGCATGGAACAAAATGGTGGAGGAAGTTGAAGTAACTGGCGGGAATCGTAGAGGAGCCTTCGCTCATTCTCAAGGTG
GGTCTACACTATTAACTAAACCAACACCTATTACAGCTATTGAAACATTGACTGAACCGAGGATTCTTACTGATATGAAT
GAGCTAAATCGTGTGTTAGGCGGCGGAGTGGTTAAGGGATCGCTGGTATTAATCGGTGGAGATCCTGGTATTGGAAAATC
AACGCTGTTGTTACAGGTATCATCACAGCTTGCGAATAAAGGGAATCAGGTCTTATACATATCCGGTGAGGAATCTTTGA
GGCAGACGAAGCTTCGTGCTGAAAGACTTGGGATAAAATCTGAGAATCTCCTCGTCTATTCGGAGACCAATTTGGAAGAA
ATCAATCGAACCATTGAAGAGACTAATCCAAGCTTTGTTATAATTGATTCAATTCAAACTGTTTTTCATCCGGAAGTAAC
CTCTGCGCCTGGGAGTGTTTCACAGGTTCGTGAGTGTACCTCAGAATTAATGAGAATAGGGAAAACAAAGGGCATCGCAA
TTTTTATTGTTGGTCATGTAACAAAAGAAGGTTCTATTGCAGGACCAAGGCTGCTTGAGCATATGGTAGATACCGTACTC
TATTTTGAAGGGGAAAGGCACCATACCTACCGGATTCTACGGGCAGTAAAGAATCGTTTTGGATCAACCAATGAAATGGG
TATTTTTGAAATGAAAGAATTTGGACTTGATGAAGTGGCAAATCCTTCAGAAATTTTCCTCGAAGAGAGATCGCAAGGTG
CTGCTGGATCAACGGTGGTCGCCTCAATGGAAGGCACCCGTCCAGTACTTGTAGAAATCCAAGCTCTAATTTCTCCGACA
AGCTTTGGAAATCCAAGGAGAATGGCAACGGGGATTGATCATAATCGAGTTCCTTTATTAATGGCAGTCTTAGAAAAGAG
AATGGGGCTATTACTTCAAAATCAAGATGCCTATCTTAAGGTGGCAGGGGGAGTCAAGCTGGATGAGCCAGCCATTGATT
TAGCGATTGCCGTAAGTATCGCTTCAAGCTTCCGTGACAAACCAACAAGAGCAACGGATTGTATTATTGGCGAGGTGGGA
TTAACGGGAGAAGTAAGACGTGTCTCTAGAATTGAACAGCGAGTGCAGGAAGCCGCGAAGCTGGGTTTTGAACGGGTTAT
ACTGCCTGCCAATAATTTAAGCGGCTGGCAAGGTCCGAAAGGTGTAGAACTCATCGGCGTGTCCACTGTAGCTGAAGCTT
TAAAAGCAGCGTTGGGAGTGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(73-224)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(366-432)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

77.826

100

0.778
  radA Streptococcus mitis NCTC 12261

62.826

100

0.628
  radA Streptococcus pneumoniae Rx1

62.826

100

0.628
  radA Streptococcus pneumoniae D39

62.826

100

0.628
  radA Streptococcus pneumoniae R6

62.826

100

0.628
  radA Streptococcus pneumoniae TIGR4

62.826

100

0.628
  radA Streptococcus mitis SK321

62.609

100

0.626