Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   U5640_RS21135 Genome accession   NZ_CP141223
Coordinates   4588606..4589283 (-) Length   225 a.a.
NCBI ID   WP_340377331.1    Uniprot ID   -
Organism   Streptomyces sp. SS7     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4583606..4594283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  - vraR 4588606..4589283 (-) 678 - - Regulator

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24026.73 Da        Isoelectric Point: 5.3365

>NTDB_id=836620 U5640_RS21135 WP_340377331.1 4588606..4589283(-) (vraR) [Streptomyces sp. SS7]
MTSGGTIRVLIADDQQMVRQGFTVLLNAHPGIEVVGQAVNGLDAIAQVAELVPDVVLMDIRMPELGGVEATRHITLAHPA
VKVLVLTTFDLDEYVYEALSAGASGFLLKDASADQLAEAVRVVAAGDALLAPGITRKLIAEFSRLNSTPRPPKKERVGDL
TERETEVLALIAQGLSNAEIARQLVVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESGLVRPSGY

Nucleotide


Download         Length: 678 bp        

>NTDB_id=836620 U5640_RS21135 WP_340377331.1 4588606..4589283(-) (vraR) [Streptomyces sp. SS7]
ATGACGAGCGGCGGCACCATCCGCGTACTGATCGCCGACGACCAGCAGATGGTCCGTCAGGGCTTCACCGTGCTGCTCAA
CGCCCACCCCGGCATCGAGGTGGTCGGGCAGGCGGTGAACGGCCTGGACGCCATCGCCCAGGTCGCCGAACTCGTCCCGG
ACGTCGTCCTGATGGACATCCGGATGCCCGAGCTCGGCGGGGTCGAGGCCACCCGTCACATCACCCTCGCGCACCCCGCC
GTCAAGGTGCTGGTGCTCACCACCTTCGACCTCGACGAGTACGTGTACGAGGCCCTGTCCGCCGGGGCGTCCGGCTTCCT
GCTGAAGGACGCCTCGGCGGACCAGCTCGCGGAGGCCGTCCGGGTGGTCGCGGCCGGTGACGCCCTGCTCGCCCCCGGCA
TCACCCGCAAGCTGATCGCCGAGTTCTCCCGGCTGAACAGCACCCCGCGGCCGCCGAAGAAGGAGCGCGTCGGCGATCTC
ACCGAACGCGAGACGGAGGTGCTCGCCCTGATCGCGCAGGGCCTGTCCAACGCGGAGATCGCACGGCAACTCGTCGTCGC
CGAGCAGACCGTGAAGACGCACGTGGGCCGCATCCTGGTGAAACTGGGCCTGCGCGACCGCACCCAGGCGGCGGTGTTCG
CGTACGAGTCGGGGCTGGTGCGGCCCTCCGGGTACTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(160-214)

Response regulator receiver domain (Response_reg)

(9-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

43.318

96.444

0.418
  degU Bacillus subtilis subsp. subtilis str. 168

42.152

99.111

0.418