Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   OO845_RS19460 Genome accession   NZ_AP026937
Coordinates   4025331..4025846 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain EC20-4B-2     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4020331..4030846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO845_RS19415 (EC204B2_37060) csrA 4020918..4021103 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  OO845_RS19445 (EC204B2_37070) yqaB 4022561..4023127 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  OO845_RS19450 (EC204B2_37080) yqaA 4023124..4023552 (+) 429 WP_001287457.1 YqaA family protein -
  OO845_RS19455 (EC204B2_37090) gshA 4023625..4025181 (+) 1557 WP_000611802.1 glutamate--cysteine ligase -
  OO845_RS19460 (EC204B2_37100) luxS 4025331..4025846 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  OO845_RS19465 (EC204B2_37110) emrB 4025910..4027448 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  OO845_RS19470 (EC204B2_37120) emrA 4027465..4028637 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  OO845_RS19475 (EC204B2_37130) emrR 4028764..4029294 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  OO845_RS19480 (EC204B2_37140) ygaH 4029385..4029720 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  OO845_RS19485 (EC204B2_37150) ygaZ 4029710..4030447 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=83659 OO845_RS19460 WP_001130211.1 4025331..4025846(+) (luxS) [Escherichia coli strain EC20-4B-2]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=83659 OO845_RS19460 WP_001130211.1 4025331..4025846(+) (luxS) [Escherichia coli strain EC20-4B-2]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment