Detailed information NTG0836588

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: U5640_RS06615
• Genome accession: NZ_CP141223
• Coordinates: 1468043..1470580 (+)
• Length: 845 a.a.
• NCBI ID: WP_340374852.1
• Uniprot ID: -
• Organism: Streptomyces sp. SS7
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 1463043..1475580

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
-	clpC	1468043..1470580 (+)	2538	-	-	Regulator

Sequence

Protein

• Length: 845 a.a.
• Molecular weight: 92196.53 Da
• Isoelectric Point: 5.0466

>NTDB_id=836588 U5640_RS06615 WP_340374852.1 1468043..1470580(+) (clpC) [Streptomyces sp. SS7]
MTSGYIGPEGDPFGEFLARFFGGPRPGPRQINIGQLLSQPARELVRGAAQYAAERGSRDLDTEHLLRAALAAEPTRSLLS
RAGADPDSLATEIDKRSGPAQHPPGEAPPPTSLSLTPAAKRALLDAHDLARSRGAGYIGPEHVLSALAANPDSAAGHILN
AARFAPAALPPEATETAQAHPERQRPTGTPTLDKYGRDLTELARQGRIDPVIGRDDEIEQTIEVLSRRGKNNPVLIGDAG
VGKTAVVEGLAQRIADGDVPDVLDGRRVIALDLTGVVAGTRFRGDFEERLNTIVGEIRAHSDQLIVFIDELHTVVGAGGG
GEGGSMDAGNILKPALARGELHVVGATTLEEYRRIEKDAALARRFQPILVPEPTVPDTIEILRGLRDRYEAHHQVRYTDE
ALVAAVQLSDRYLTDRRLPDKAIDLIDQAGARVRLGARTKGTDVRALEREAEQLARDKDQAVADESYELATQLRDRITEL
KQRIADTSGEEEVDEGQHLEVTAEAVAEVVSRQTGIPVASLTQEEKDRLLGLEEHLHERVVGQEEAVRVVADAVLRSRAG
LSSPDRPIGSFLFLGPTGVGKTELARALAEALFGSEERMVRLDMSEYQERHTVSRLVGAPPGYVGHEEAGQLTEVVRRHP
YSLLLLDEVEKAHPDVFNILLQVLDDGRLTDSQGRTVDFTNTVIVMTSNLGSEAISRRGAGIGFGPGGSEADEEARREQI
LRPLRDHFRPEFLNRIDEIVVFHQLTGDQLRQITELLLQKTRRLLQAQGIGVQFTAGAVDWLAERGYQPEYGARPLRRTI
QREVDNRLSRLLLDGRVGNGDRVRVEVEDGQLAFRTEPPVPAPEL

Nucleotide

• Length: 2538 bp

>NTDB_id=836588 U5640_RS06615 WP_340374852.1 1468043..1470580(+) (clpC) [Streptomyces sp. SS7]
ATGACCAGCGGCTACATCGGCCCGGAGGGCGACCCCTTCGGTGAATTCCTGGCCCGCTTCTTCGGCGGACCCCGCCCCGG
CCCCCGCCAGATCAACATCGGCCAGCTCCTGAGCCAGCCGGCCCGGGAACTGGTCCGGGGCGCCGCCCAGTACGCCGCCG
AGCGCGGCAGCCGTGACCTGGACACCGAGCACCTGCTGCGCGCGGCCCTCGCCGCGGAGCCGACCCGGAGCCTGCTCAGC
CGGGCCGGCGCCGATCCGGACTCGCTGGCGACGGAGATCGACAAACGGTCCGGGCCGGCGCAGCACCCGCCGGGCGAGGC
ACCCCCGCCGACCTCGCTGTCCCTCACCCCGGCCGCCAAACGGGCCCTGCTGGACGCCCACGACCTGGCCCGCTCCCGCG
GGGCGGGGTACATCGGCCCCGAGCACGTGCTCAGCGCCCTCGCCGCGAACCCGGACTCGGCGGCCGGGCACATCCTGAAC
GCGGCCCGGTTCGCGCCCGCCGCCCTGCCGCCCGAAGCCACGGAGACCGCGCAGGCGCACCCCGAGCGGCAGCGCCCCAC
CGGCACCCCCACCCTGGACAAGTACGGCCGGGACCTCACCGAGCTGGCCCGCCAGGGCCGGATCGACCCGGTGATCGGCC
GGGACGACGAGATCGAGCAGACCATCGAGGTGCTGTCCCGGCGCGGCAAGAACAACCCGGTACTGATCGGGGACGCGGGC
GTCGGCAAGACCGCCGTGGTGGAGGGACTCGCCCAGCGCATCGCCGACGGTGACGTGCCGGACGTACTGGACGGCCGCCG
GGTGATCGCCCTGGACCTGACCGGGGTGGTCGCGGGCACCCGCTTCCGGGGCGACTTCGAGGAGCGTCTGAACACCATCG
TGGGCGAGATCCGCGCCCACTCCGACCAGCTGATCGTGTTCATCGACGAGCTGCACACGGTGGTCGGCGCGGGCGGGGGC
GGCGAGGGCGGCTCGATGGACGCCGGGAACATCCTCAAACCGGCGCTGGCGCGCGGCGAGCTGCACGTCGTGGGGGCGAC
GACGCTGGAGGAGTACCGGCGGATCGAGAAGGACGCGGCGCTCGCCCGCCGCTTCCAGCCGATCCTGGTGCCCGAGCCGA
CCGTGCCGGACACGATCGAGATCCTGCGCGGGCTGCGCGACCGCTACGAGGCCCACCACCAGGTCCGCTACACCGACGAG
GCGCTGGTGGCGGCCGTGCAGCTCTCGGACCGCTACCTCACCGACCGCCGGCTGCCGGACAAGGCGATCGACCTGATCGA
CCAGGCCGGGGCGCGGGTGCGCCTCGGTGCCCGCACCAAGGGCACGGACGTACGGGCACTGGAGCGCGAGGCCGAGCAGC
TCGCCCGCGACAAGGACCAGGCGGTCGCGGACGAGAGTTATGAGCTGGCCACCCAACTGCGCGACCGGATCACCGAGTTG
AAGCAGCGCATCGCGGACACCTCCGGCGAGGAGGAGGTCGACGAGGGCCAGCACCTGGAGGTCACCGCGGAGGCCGTCGC
CGAGGTGGTGTCCCGGCAGACCGGCATCCCGGTGGCGAGCCTCACCCAGGAGGAGAAGGACCGGCTGCTCGGGCTGGAGG
AGCATCTGCACGAGCGGGTGGTGGGGCAGGAGGAGGCCGTACGGGTCGTCGCGGACGCGGTGCTGCGCTCACGCGCCGGG
CTGTCGAGCCCGGACCGCCCGATCGGCAGCTTCCTCTTCCTCGGGCCGACCGGGGTGGGCAAGACCGAGCTGGCCCGGGC
CCTCGCGGAGGCCCTGTTCGGCAGCGAGGAGCGGATGGTCCGGCTCGACATGAGCGAGTACCAGGAGCGGCACACCGTCA
GCCGGCTGGTGGGCGCCCCGCCCGGGTACGTCGGCCACGAGGAGGCCGGTCAGCTCACCGAGGTGGTGCGCCGGCACCCG
TACTCGCTGCTGCTGCTCGACGAGGTGGAGAAGGCGCACCCGGACGTCTTCAACATCCTGCTCCAGGTCCTCGACGACGG
ACGGCTGACCGACTCCCAGGGCCGTACCGTCGACTTCACCAACACGGTGATCGTGATGACGAGCAACCTGGGCTCGGAGG
CGATCAGCCGGCGCGGTGCCGGCATCGGCTTCGGACCGGGCGGCAGCGAGGCGGACGAGGAGGCGCGACGGGAGCAGATC
CTGCGGCCGCTGCGGGACCACTTCCGGCCGGAGTTCCTCAACCGCATCGACGAGATCGTGGTCTTCCACCAGCTCACCGG
CGACCAACTGCGGCAGATCACCGAGCTGTTGCTGCAGAAGACCCGGCGGCTGCTGCAGGCGCAGGGCATCGGGGTGCAGT
TCACGGCGGGGGCGGTGGACTGGCTGGCCGAGCGCGGTTATCAACCCGAGTACGGGGCCCGGCCGTTGCGCCGCACGATC
CAGCGCGAGGTGGACAACCGGCTGTCGCGGCTGCTGCTCGACGGCCGGGTCGGCAACGGGGACCGGGTCCGGGTGGAGGT
CGAGGACGGGCAGCTCGCGTTCCGCACCGAGCCGCCCGTCCCCGCCCCGGAGCTATGA

Domains

Predicted by InterProScan.

• AAA lid domain (AAA_lid_9) (375-475)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (126-169)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (48-95)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (745-825)

• ATPase family associated with various cellular activities (AAA) (AAA) (234-366)

• AAA domain (Cdc48 subfamily) (AAA_2) (566-739)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	48.771	96.331	0.47
clpC	Streptococcus pneumoniae TIGR4	45.923	98.698	0.453
clpC	Streptococcus pneumoniae Rx1	45.923	98.698	0.453
clpC	Streptococcus pneumoniae D39	45.923	98.698	0.453
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	46.202	95.03	0.439
clpC	Streptococcus thermophilus LMD-9	44.727	97.633	0.437
clpC	Streptococcus mutans UA159	43.234	98.817	0.427
clpC	Streptococcus thermophilus LMG 18311	46.348	89.112	0.413
clpE	Streptococcus mutans UA159	53.628	75.03	0.402
clpC	Lactococcus lactis subsp. cremoris KW2	51.811	75.148	0.389
clpE	Streptococcus pneumoniae Rx1	52.472	74.201	0.389
clpE	Streptococcus pneumoniae D39	52.472	74.201	0.389
clpE	Streptococcus pneumoniae R6	52.472	74.201	0.389
clpE	Streptococcus pneumoniae TIGR4	52.472	74.201	0.389