Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   QNH39_RS08045 Genome accession   NZ_CP126114
Coordinates   1607772..1609592 (+) Length   606 a.a.
NCBI ID   WP_066084461.1    Uniprot ID   A0AA95MPB1
Organism   Neobacillus novalis strain XLM17     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1602772..1614592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH39_RS08025 (QNH39_08025) spxA 1603266..1603661 (+) 396 WP_066084450.1 transcriptional regulator SpxA -
  QNH39_RS08030 (QNH39_08030) mecA 1603929..1604600 (+) 672 WP_066084453.1 adaptor protein MecA -
  QNH39_RS08035 (QNH39_08035) cls 1604664..1606175 (+) 1512 WP_066096244.1 cardiolipin synthase -
  QNH39_RS08040 (QNH39_08040) - 1606459..1607655 (+) 1197 WP_066084458.1 competence protein CoiA family protein -
  QNH39_RS08045 (QNH39_08045) pepF 1607772..1609592 (+) 1821 WP_066084461.1 oligoendopeptidase F Regulator
  QNH39_RS08050 (QNH39_08050) - 1609634..1609807 (-) 174 WP_156482174.1 hypothetical protein -
  QNH39_RS08055 (QNH39_08055) - 1610277..1611149 (-) 873 WP_235845463.1 ClpXP adapter SpxH family protein -
  QNH39_RS08060 (QNH39_08060) - 1611133..1611543 (-) 411 WP_066084468.1 globin -
  QNH39_RS08065 (QNH39_08065) - 1611724..1612320 (-) 597 WP_066084474.1 CYTH domain-containing protein -
  QNH39_RS08070 (QNH39_08070) - 1612441..1612800 (+) 360 WP_066084477.1 hypothetical protein -
  QNH39_RS08075 (QNH39_08075) - 1612819..1613457 (+) 639 WP_066084488.1 GTP pyrophosphokinase family protein -
  QNH39_RS08080 (QNH39_08080) - 1613507..1614301 (+) 795 WP_066084493.1 NAD kinase -

Sequence

Protein


Download         Length: 606 a.a.        Molecular weight: 69763.32 Da        Isoelectric Point: 4.8431

>NTDB_id=836588 QNH39_RS08045 WP_066084461.1 1607772..1609592(+) (pepF) [Neobacillus novalis strain XLM17]
MTNETAVKSLPARSEISVDDTWKLEDIFARDEEWEKEFQEVKKQIPGIKEFEGKLAESAETLYKALQFQDQLLERIGKLY
TYSHMRYDQDTTNSFYQGLDDRMKNLYSQAASQLAFIVPEILSIDESKVTSFLNEKPELKLYKQAIEEINLQRPHVLTAE
QEALLAEASEVMDASSNTFGMLNNADLEFPAIKDENGEEVEITHGRYSRFLESGDQRVRRDAFKAVYKTYGAFKNTFSST
LSGNVKKDNFNARVRKYDSARHAALAANNIPESVYDNLVNTVTENLPLLHRYVKLRKKVLGLDELHMYDLYTPLVKDVKM
EVKYEEAKDLVIKGLAPLGEEYARILKEGFDNRWVDVHENKGKRSGAYSSGAYGTHPYILMNWQDNVNNLFTLAHEFGHS
VHSYYTRKSQPYPYGNYSIFVAEVASTCNEALLNDYLLKTIDDEQKRIYLLNHYLEGFRGTVFRQTMFAEFEHVIHQKAQ
NNEALTADALTEAYYELNKKYFGEEDIVIDEEIGLEWARIPHFYYNYYVYQYATGFSAATALSKQILEEGEPAVKRYIEE
FLSAGSSDYPIEVLKKAGVDMTSADPVKNACKVFEEKLNELEQLLS

Nucleotide


Download         Length: 1821 bp        

>NTDB_id=836588 QNH39_RS08045 WP_066084461.1 1607772..1609592(+) (pepF) [Neobacillus novalis strain XLM17]
ATGACAAATGAAACAGCAGTAAAGTCATTGCCGGCTAGAAGTGAGATTTCTGTGGATGACACGTGGAAATTAGAGGATAT
TTTTGCGCGGGATGAGGAGTGGGAAAAAGAGTTTCAAGAGGTAAAAAAGCAAATCCCTGGCATTAAGGAGTTTGAAGGGA
AATTAGCAGAAAGTGCAGAGACGCTTTATAAAGCTCTTCAGTTCCAGGATCAACTGTTGGAGCGAATTGGGAAGCTTTAT
ACATATTCGCATATGCGCTACGACCAGGATACAACAAACTCCTTTTACCAAGGCTTAGATGACAGGATGAAGAATTTGTA
TTCGCAGGCAGCCAGTCAATTGGCCTTTATCGTGCCTGAAATCCTTTCGATTGATGAAAGTAAGGTCACAAGCTTTTTAA
ATGAAAAACCAGAATTAAAGCTATACAAACAGGCTATTGAAGAAATTAATCTGCAAAGGCCGCATGTGCTGACTGCTGAG
CAGGAAGCTTTATTAGCGGAAGCAAGCGAAGTAATGGATGCTTCCAGCAATACATTTGGAATGTTAAATAATGCTGATTT
GGAGTTCCCCGCCATTAAAGATGAAAACGGGGAAGAGGTTGAAATTACTCATGGCCGCTATAGTCGTTTCTTAGAAAGCG
GAGACCAGCGGGTAAGACGGGATGCCTTTAAAGCAGTCTATAAAACATATGGCGCTTTTAAAAATACATTCTCGAGCACA
TTAAGCGGCAACGTGAAAAAGGATAATTTTAATGCAAGAGTAAGAAAGTATGACTCAGCAAGGCATGCAGCCCTTGCAGC
CAACAATATTCCGGAGAGTGTGTACGATAACCTTGTTAATACGGTTACGGAAAATCTTCCTTTATTACATCGCTACGTGA
AGCTCCGAAAAAAGGTGCTGGGTCTCGATGAACTTCATATGTATGATTTGTACACACCACTTGTAAAAGATGTGAAAATG
GAAGTTAAATATGAGGAAGCAAAGGATTTAGTCATCAAAGGACTGGCCCCGTTGGGTGAAGAATATGCGAGAATCCTAAA
AGAGGGCTTTGATAATCGCTGGGTCGATGTCCATGAGAATAAAGGGAAGCGGAGCGGCGCTTACTCTTCTGGAGCATATG
GAACACATCCGTATATTCTTATGAACTGGCAGGATAATGTGAATAATTTATTTACCTTGGCCCATGAATTCGGTCACTCT
GTGCATAGCTACTATACACGGAAATCACAGCCATATCCGTATGGTAACTATTCGATTTTTGTTGCTGAAGTGGCTTCCAC
CTGTAATGAAGCATTGCTAAACGATTATTTATTAAAAACGATTGATGATGAACAGAAACGTATCTACCTCCTTAATCACT
ATTTAGAAGGGTTTAGAGGAACGGTGTTCAGGCAGACGATGTTTGCGGAGTTTGAGCATGTAATTCATCAAAAAGCCCAA
AATAATGAGGCGTTAACCGCTGATGCTTTAACAGAGGCCTATTATGAATTGAATAAGAAGTATTTTGGTGAAGAGGATAT
TGTAATCGATGAGGAAATCGGCTTAGAGTGGGCGAGAATTCCGCATTTTTATTACAATTATTATGTGTACCAGTATGCTA
CTGGCTTCAGTGCTGCAACTGCGTTAAGCAAGCAGATTTTAGAAGAAGGCGAGCCAGCGGTAAAACGTTATATTGAGGAG
TTCTTAAGTGCCGGAAGCTCTGACTATCCAATTGAAGTGCTAAAGAAAGCAGGCGTCGACATGACGAGTGCAGACCCTGT
TAAGAATGCTTGTAAGGTATTTGAAGAAAAACTGAATGAATTAGAACAATTATTATCATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(211-591)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.244

98.185

0.484