Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   U5640_RS00615 Genome accession   NZ_CP141223
Coordinates   141211..141861 (+) Length   216 a.a.
NCBI ID   WP_340373829.1    Uniprot ID   -
Organism   Streptomyces sp. SS7     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 136211..146861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  - vraR 141211..141861 (+) 651 - - Regulator

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 22920.47 Da        Isoelectric Point: 6.7590

>NTDB_id=836586 U5640_RS00615 WP_340373829.1 141211..141861(+) (vraR) [Streptomyces sp. SS7]
MIRAMIVDDDALVRLGLTDLLATDKDIDVVAQACDGLQAVERATAHRVDVALVDVRMPGMDGITATARLRALPHPPKVIT
LTTFDLDEYVYNSLAAGADGFLLKDTEPAEILRAVHLVAGGSAMLHPAAARRLIDRYHAANPPRATAAQSLLGRLTPRER
DVLALLAVGDTNAGIAARLAMRESTVKAHVSRILSALEVTNRVQAALVARDAGLTG

Nucleotide


Download         Length: 651 bp        

>NTDB_id=836586 U5640_RS00615 WP_340373829.1 141211..141861(+) (vraR) [Streptomyces sp. SS7]
ATGATCCGCGCCATGATCGTCGACGATGACGCCCTGGTCCGCCTCGGACTGACCGACCTCCTCGCCACGGACAAGGACAT
CGACGTGGTCGCCCAGGCCTGCGACGGGCTCCAGGCCGTCGAACGGGCCACGGCCCACCGTGTCGACGTCGCCCTCGTCG
ACGTACGGATGCCGGGCATGGACGGCATCACCGCCACCGCCAGGCTGCGTGCGCTCCCCCACCCCCCGAAAGTGATCACC
CTGACCACCTTCGACCTCGACGAATACGTCTACAACTCCCTTGCCGCCGGAGCCGACGGGTTCCTGCTCAAGGACACCGA
ACCCGCCGAGATACTGCGCGCCGTCCACCTCGTCGCCGGCGGGTCGGCCATGCTGCACCCCGCCGCGGCCCGCCGCCTCA
TCGATCGCTACCACGCCGCCAACCCGCCCCGGGCAACCGCCGCCCAGTCCCTGCTCGGCCGCCTCACCCCCCGCGAACGC
GACGTTCTCGCCCTCCTCGCCGTAGGCGACACCAACGCCGGCATCGCCGCCCGCCTGGCCATGCGCGAGAGCACCGTCAA
GGCCCACGTCAGCCGCATACTGAGCGCACTGGAGGTCACCAACCGCGTCCAGGCGGCCCTCGTGGCCCGCGACGCCGGGC
TCACCGGCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)

Response regulator receiver domain (Response_reg)

(5-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

36.916

99.074

0.366
  degU Bacillus subtilis subsp. subtilis str. 168

35.135

100

0.361