Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   U5072_RS24180 Genome accession   NZ_CP141222
Coordinates   5681176..5683017 (+) Length   613 a.a.
NCBI ID   WP_331453552.1    Uniprot ID   -
Organism   Streptomyces sp. SS162     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5676176..5688017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U5072_RS24165 (U5072_24165) dxs 5676865..5678829 (+) 1965 WP_051839426.1 1-deoxy-D-xylulose-5-phosphate synthase -
  U5072_RS24170 (U5072_24170) - 5679002..5680543 (+) 1542 WP_051839427.1 amino acid permease -
  U5072_RS24175 (U5072_24175) - 5680728..5681105 (-) 378 WP_249464405.1 NTP pyrophosphohydrolase -
  U5072_RS24180 (U5072_24180) recQ 5681176..5683017 (+) 1842 WP_331453552.1 DNA helicase RecQ Machinery gene
  U5072_RS24185 (U5072_24185) - 5683309..5685438 (-) 2130 WP_031131790.1 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein -
  U5072_RS24190 (U5072_24190) - 5685435..5686661 (-) 1227 WP_249464408.1 acetyl-CoA C-acyltransferase -
  U5072_RS24195 (U5072_24195) - 5687087..5687446 (+) 360 WP_069978605.1 hypothetical protein -

Sequence

Protein


Download         Length: 613 a.a.        Molecular weight: 66937.28 Da        Isoelectric Point: 6.3540

>NTDB_id=836582 U5072_RS24180 WP_331453552.1 5681176..5683017(+) (recQ) [Streptomyces sp. SS162]
MTSPHASDTDPALEVLGRVFGYDSFRGEQREIIEHVAGGGDALVLMPTGGGKSLCYQIPALLRPGVGVVVSPLIALMQDQ
VDALRAVGVRAGFLNSTQDPDERRMVEAEFLAGELDLLYLAPERLRVDATLRLLERGTISLFAIDEAHCVAQWGHDFRPD
YLQLSQLHERWPDVPRIALTATATRATHAEIAARLKLQDARHFVASFDRPNIQYRIAPKNEPRKQLLALLRGEHEGDAGI
VYCLSRASVEKTAAFLVEHGIDAVPYHAGLDARVRAENQARFLREDGLVVVATIAFGMGIDKPDVRFVAHLDLPKSVEGY
YQETGRAGRDGLPSTAWLAYGLNDVVQQRRMIDTGEGDEEHRRRLAAHLDAMLALCETVECRRVQLLAYFGQESGPCGNC
DTCLTPPKSWDGTVAAQKALSTVVRLKRERGQSFGVGQIVDILLGRKTDKVIRFDHDALSVFGIGTELTEAQWRGVVRQL
LAQRLLAVQGEYNTLALTEDSAEVLSGRRQVLLRSEPEKPARASAKSGGGRKKAAPADLPEEALPVFERLRAWRAATAKE
QGVPAYVVFHDATLREIAVAPPATLAELGAVGGVGENKLAKYGQSLLDALAGE

Nucleotide


Download         Length: 1842 bp        

>NTDB_id=836582 U5072_RS24180 WP_331453552.1 5681176..5683017(+) (recQ) [Streptomyces sp. SS162]
ATGACTTCCCCGCACGCATCCGACACGGACCCCGCCCTCGAGGTCCTCGGCCGGGTCTTCGGCTACGACTCCTTCCGCGG
AGAGCAGCGGGAGATCATCGAGCACGTCGCGGGCGGCGGTGACGCGCTCGTCCTCATGCCGACCGGCGGCGGCAAGTCGC
TGTGCTACCAGATCCCCGCGCTGCTGCGCCCCGGGGTCGGCGTCGTCGTCTCCCCGCTGATCGCGTTGATGCAGGACCAG
GTCGACGCGCTGCGCGCCGTCGGCGTGCGCGCCGGCTTCCTCAACTCCACGCAGGACCCGGACGAGCGGCGGATGGTGGA
GGCCGAGTTCCTCGCCGGTGAGCTGGACCTGCTGTACCTGGCGCCCGAGCGGCTGCGCGTCGACGCGACGCTGCGGCTGC
TGGAGCGCGGCACGATCTCGCTCTTCGCCATCGACGAGGCGCACTGCGTCGCCCAGTGGGGCCACGACTTCCGGCCGGAC
TACCTCCAGCTCTCCCAGCTCCACGAGCGCTGGCCCGACGTGCCGCGCATCGCCCTGACCGCGACCGCGACGCGGGCGAC
GCACGCCGAGATCGCCGCCCGGCTGAAGCTGCAGGACGCCCGGCACTTCGTCGCCAGCTTCGACCGGCCCAACATCCAGT
ACCGCATCGCCCCGAAGAACGAGCCGCGCAAGCAGCTCCTCGCCCTGCTGCGCGGCGAGCACGAGGGCGACGCGGGCATC
GTCTACTGCCTGTCCCGCGCCTCCGTGGAGAAGACCGCGGCGTTCCTCGTCGAGCACGGCATCGACGCCGTCCCCTACCA
CGCCGGCCTCGACGCCCGCGTCCGCGCGGAGAACCAGGCCCGCTTCCTGCGGGAGGACGGCCTGGTCGTCGTCGCGACGA
TCGCGTTCGGCATGGGCATCGACAAGCCGGACGTGCGGTTCGTCGCCCACCTCGACCTGCCGAAGTCCGTGGAGGGGTAC
TACCAGGAGACCGGCCGCGCGGGCCGCGACGGGCTGCCGTCCACGGCCTGGCTGGCCTACGGGCTGAACGACGTGGTGCA
GCAGCGCCGCATGATCGACACGGGCGAGGGCGACGAGGAGCACCGCCGCCGCCTCGCGGCGCACCTCGACGCGATGCTGG
CGCTCTGCGAGACCGTGGAGTGCCGCCGCGTGCAGCTGCTCGCCTACTTCGGCCAGGAGAGCGGCCCCTGCGGCAACTGC
GACACGTGCCTGACGCCGCCCAAGTCGTGGGACGGCACCGTCGCCGCGCAGAAGGCGCTGTCGACGGTGGTCCGGCTGAA
GCGCGAGCGGGGCCAGTCGTTCGGCGTCGGGCAGATCGTCGACATCCTGCTGGGCCGCAAGACCGACAAGGTGATCCGCT
TCGACCACGACGCGCTGAGCGTCTTCGGGATCGGCACGGAGCTGACCGAGGCGCAGTGGCGCGGCGTGGTGCGGCAGCTG
CTGGCGCAGCGGCTCCTCGCCGTGCAGGGCGAGTACAACACCCTCGCCCTCACCGAGGACTCCGCCGAGGTGCTGTCCGG
CCGCCGGCAGGTGCTGCTGCGCAGCGAGCCGGAGAAGCCGGCCCGCGCCTCCGCGAAGTCCGGCGGCGGCCGGAAGAAGG
CCGCGCCCGCGGACCTGCCCGAGGAGGCGCTGCCCGTCTTCGAGCGGCTGCGCGCCTGGCGGGCGGCCACCGCCAAGGAG
CAGGGCGTCCCGGCGTACGTCGTCTTCCACGACGCGACGCTGCGGGAGATCGCCGTCGCCCCGCCCGCGACCCTCGCCGA
GCTGGGCGCGGTCGGCGGGGTCGGGGAGAACAAGCTCGCCAAGTACGGCCAGTCGCTGCTGGACGCCCTGGCCGGGGAGT
GA

Domains

Predicted by InterProScan.

HRDC domain (HRDC)

(545-610)

DEAD/DEAH box helicase (DEAD)

(29-185)

RQC domain (RQC)

(406-520)

Helicase conserved C-terminal domain (Helicase_C)

(224-330)

RecQ zinc-binding (RecQ_Zn_bind)

(343-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

38.143

98.369

0.375