Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | U5072_RS16660 | Genome accession | NZ_CP141222 |
| Coordinates | 3856576..3859101 (+) | Length | 841 a.a. |
| NCBI ID | WP_031133393.1 | Uniprot ID | A0A1Y2NWS0 |
| Organism | Streptomyces sp. SS162 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 3851576..3864101
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| U5072_RS16630 (U5072_16630) | - | 3852189..3852950 (+) | 762 | WP_331453066.1 | hypothetical protein | - |
| U5072_RS16635 (U5072_16635) | - | 3852965..3853150 (+) | 186 | WP_031133521.1 | hypothetical protein | - |
| U5072_RS16640 (U5072_16640) | - | 3853449..3853808 (+) | 360 | Protein_3263 | BlaI/MecI/CopY family transcriptional regulator | - |
| U5072_RS16645 (U5072_16645) | - | 3854429..3854974 (+) | 546 | WP_079140563.1 | amino-acid N-acetyltransferase | - |
| U5072_RS16650 (U5072_16650) | - | 3855119..3855454 (+) | 336 | WP_031133396.1 | Lsr2 family protein | - |
| U5072_RS16655 (U5072_16655) | - | 3855537..3856145 (-) | 609 | WP_031133395.1 | SCO3374 family protein | - |
| U5072_RS16660 (U5072_16660) | clpC | 3856576..3859101 (+) | 2526 | WP_031133393.1 | ATP-dependent Clp protease ATP-binding subunit | Regulator |
| U5072_RS16665 (U5072_16665) | dacB | 3859364..3860992 (-) | 1629 | WP_051839645.1 | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | - |
| U5072_RS16670 (U5072_16670) | - | 3861436..3862152 (+) | 717 | WP_031133390.1 | M23 family metallopeptidase | - |
| U5072_RS16675 (U5072_16675) | cseC | 3862178..3863506 (-) | 1329 | WP_331453067.1 | two-component system sensor histidine kinase CseC | - |
Sequence
Protein
Download Length: 841 a.a. Molecular weight: 93015.34 Da Isoelectric Point: 5.8426
>NTDB_id=836557 U5072_RS16660 WP_031133393.1 3856576..3859101(+) (clpC) [Streptomyces sp. SS162]
MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVRQQVEEIIGQGQQAPSGHIPF
TPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSGYSGGKEAATAGGPAEG
TPSTSLVLDQFGRNLTQAARESKLDPVIGREKEIERVMQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQAIVKGEVPETLK
DKHLYTLDLGALVAGSRYRGDFEERLKKVLKEIRTRGDIILFIDELHTLVGAGAAEGAIDAASILKPMLARGELQTIGAT
TLDEYRKYLEKDAALERRFQPIQVAEPSLPHTIEILKGLRDRYEAHHRVSITDEALVQAATLADRYISDRFLPDKAIDLI
DEAGSRMRIRRMTAPPDLREFDEKIAGVRREKESAIDAQDFEKAASLRDKEKQLLAAKAKREKEWKAGDMDVVAEVDGEL
IAEVLATATGIPVFKLTEEESSRLLRMEDELHKRVIGQKDAIKALSQAIRRTRAGLKDPKRPGGSFIFAGPSGVGKTELS
KTLAEFLFGDEDAMISLDMSEFSEKHTVSRLFGSPPGYVGYEEGGQLTEKVRRKPFSVVLFDEVEKAHPDIFNSLLQILE
DGRLTDSQGRVVDFKNTVIIMTTNLGTRDISKGFNLGFAAQGDVKTGYDRMKAKVNEELKQHFRPEFLNRVDDTVVFHQL
SQEDIIQIVDLMIAKVDERLKDRDMGIELSGDAKILLAKRGYDPVLGARPLRRTIQREIEDILSEKILFGELRPGHIVVV
DTEGEGEEKKFTFRGEEKSALPDVPPIEAAGGPGPNLSKDA
MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVRQQVEEIIGQGQQAPSGHIPF
TPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSGYSGGKEAATAGGPAEG
TPSTSLVLDQFGRNLTQAARESKLDPVIGREKEIERVMQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQAIVKGEVPETLK
DKHLYTLDLGALVAGSRYRGDFEERLKKVLKEIRTRGDIILFIDELHTLVGAGAAEGAIDAASILKPMLARGELQTIGAT
TLDEYRKYLEKDAALERRFQPIQVAEPSLPHTIEILKGLRDRYEAHHRVSITDEALVQAATLADRYISDRFLPDKAIDLI
DEAGSRMRIRRMTAPPDLREFDEKIAGVRREKESAIDAQDFEKAASLRDKEKQLLAAKAKREKEWKAGDMDVVAEVDGEL
IAEVLATATGIPVFKLTEEESSRLLRMEDELHKRVIGQKDAIKALSQAIRRTRAGLKDPKRPGGSFIFAGPSGVGKTELS
KTLAEFLFGDEDAMISLDMSEFSEKHTVSRLFGSPPGYVGYEEGGQLTEKVRRKPFSVVLFDEVEKAHPDIFNSLLQILE
DGRLTDSQGRVVDFKNTVIIMTTNLGTRDISKGFNLGFAAQGDVKTGYDRMKAKVNEELKQHFRPEFLNRVDDTVVFHQL
SQEDIIQIVDLMIAKVDERLKDRDMGIELSGDAKILLAKRGYDPVLGARPLRRTIQREIEDILSEKILFGELRPGHIVVV
DTEGEGEEKKFTFRGEEKSALPDVPPIEAAGGPGPNLSKDA
Nucleotide
Download Length: 2526 bp
>NTDB_id=836557 U5072_RS16660 WP_031133393.1 3856576..3859101(+) (clpC) [Streptomyces sp. SS162]
ATGTTCGAGAGGTTCACCGACCGCGCGCGGCGGGTTGTCGTCCTGGCTCAGGAAGAAGCCCGGATGCTCAACCACAACTA
CATCGGCACCGAGCACATCCTCCTGGGCCTGATCCACGAGGGTGAGGGTGTCGCCGCTAAGGCCCTGGAGAGCCTCGGGA
TTTCGCTCGAGGCGGTCCGCCAGCAGGTGGAGGAGATCATCGGCCAGGGCCAGCAGGCCCCGTCCGGGCACATCCCCTTC
ACGCCCCGTGCCAAGAAGGTGCTGGAGCTGTCGCTCCGCGAGGCCCTTCAGCTCGGCCACAACTACATCGGCACCGAGCA
CATCCTGCTGGGTCTGATCCGCGAGGGCGAGGGCGTCGCCGCCCAGGTCCTCGTGAAGCTGGGCGCCGATCTCAACCGGG
TGCGGCAGCAGGTCATCCAGCTGCTCTCCGGCTACTCCGGGGGCAAGGAGGCCGCCACCGCCGGCGGTCCCGCCGAGGGC
ACCCCCTCCACGTCCCTTGTCCTCGACCAGTTCGGCCGGAATCTGACCCAGGCCGCCCGCGAATCCAAGCTCGACCCGGT
CATCGGGCGCGAGAAGGAGATCGAGCGGGTCATGCAGGTGCTGTCCCGCCGTACGAAGAACAACCCGGTCCTCATCGGCG
AGCCCGGCGTCGGCAAGACCGCCGTCGTCGAGGGCCTGGCGCAGGCGATCGTCAAGGGCGAGGTGCCCGAGACCCTCAAG
GACAAGCACCTCTACACCCTGGACCTCGGCGCGCTGGTCGCCGGCTCCCGCTACCGCGGTGACTTCGAGGAGCGCCTGAA
GAAGGTCCTCAAGGAGATCCGCACGCGCGGCGACATCATCCTCTTCATCGACGAGCTCCACACCCTGGTGGGTGCGGGCG
CCGCCGAGGGCGCCATCGACGCCGCGTCGATCCTGAAGCCGATGCTGGCCCGCGGTGAGCTCCAGACCATCGGTGCCACC
ACGCTCGACGAGTACCGCAAGTACCTGGAGAAGGACGCCGCGCTGGAGCGCCGCTTCCAGCCGATCCAGGTCGCCGAGCC
GTCCCTGCCGCACACGATCGAGATCCTCAAGGGTCTGCGCGACCGGTATGAGGCGCACCACCGCGTGTCCATCACGGACG
AGGCGCTGGTGCAGGCCGCCACGCTGGCCGACCGGTACATCTCCGACCGCTTCCTGCCGGACAAGGCGATCGACCTCATC
GACGAGGCAGGCTCCCGGATGCGCATCCGCCGGATGACCGCGCCGCCGGACCTGCGCGAGTTCGACGAGAAGATCGCCGG
TGTCCGCCGGGAGAAGGAGTCCGCGATCGACGCGCAGGACTTCGAGAAGGCCGCGTCGCTGCGCGACAAGGAGAAGCAGC
TCCTGGCCGCCAAGGCCAAGCGGGAGAAGGAGTGGAAGGCCGGCGACATGGACGTCGTCGCCGAGGTCGACGGCGAGCTG
ATCGCCGAGGTCCTGGCGACCGCCACCGGCATCCCGGTCTTCAAGCTGACGGAGGAGGAGTCCTCCCGTCTGCTCCGCAT
GGAGGACGAGCTCCACAAGCGCGTCATCGGCCAGAAGGACGCCATTAAGGCCCTGTCGCAGGCCATCCGCCGTACGCGGG
CCGGCCTCAAGGACCCGAAGCGCCCCGGTGGCTCGTTCATCTTCGCCGGCCCGTCCGGTGTCGGTAAGACCGAGCTGTCC
AAGACGCTCGCCGAGTTCCTCTTCGGCGACGAGGACGCGATGATCTCGCTCGACATGTCCGAGTTCAGCGAGAAGCACAC
CGTGTCCCGCCTCTTCGGCTCCCCGCCCGGATACGTGGGCTACGAGGAGGGCGGCCAGCTCACCGAGAAGGTGCGCCGCA
AGCCGTTCTCCGTCGTCCTCTTCGACGAGGTCGAGAAGGCCCACCCCGACATCTTCAACTCCCTGCTCCAGATCCTGGAG
GACGGTCGCCTGACCGACTCCCAGGGCCGGGTCGTGGACTTCAAGAACACGGTCATCATCATGACGACCAACCTCGGGAC
CCGGGACATCTCCAAGGGCTTCAACCTGGGCTTCGCCGCGCAGGGCGACGTCAAGACCGGCTACGACCGGATGAAGGCGA
AGGTCAACGAGGAGCTGAAGCAGCACTTCCGCCCCGAGTTCCTGAACCGTGTCGACGACACCGTCGTCTTCCACCAGCTC
AGCCAGGAAGACATCATCCAGATCGTCGACCTGATGATCGCCAAGGTGGACGAGCGTCTGAAGGACCGCGACATGGGCAT
CGAGCTCAGCGGTGACGCGAAGATCCTCCTGGCGAAGCGGGGCTACGACCCGGTGCTGGGTGCCCGTCCGCTCCGCCGGA
CGATCCAGCGCGAGATCGAGGACATCCTGTCGGAGAAGATCCTCTTCGGCGAGCTGCGCCCCGGTCACATCGTGGTCGTG
GACACCGAGGGCGAGGGTGAGGAGAAGAAGTTCACCTTCCGCGGCGAGGAGAAGTCGGCCCTGCCGGACGTGCCGCCCAT
CGAGGCGGCCGGCGGCCCCGGACCGAACCTCTCCAAGGACGCCTGA
ATGTTCGAGAGGTTCACCGACCGCGCGCGGCGGGTTGTCGTCCTGGCTCAGGAAGAAGCCCGGATGCTCAACCACAACTA
CATCGGCACCGAGCACATCCTCCTGGGCCTGATCCACGAGGGTGAGGGTGTCGCCGCTAAGGCCCTGGAGAGCCTCGGGA
TTTCGCTCGAGGCGGTCCGCCAGCAGGTGGAGGAGATCATCGGCCAGGGCCAGCAGGCCCCGTCCGGGCACATCCCCTTC
ACGCCCCGTGCCAAGAAGGTGCTGGAGCTGTCGCTCCGCGAGGCCCTTCAGCTCGGCCACAACTACATCGGCACCGAGCA
CATCCTGCTGGGTCTGATCCGCGAGGGCGAGGGCGTCGCCGCCCAGGTCCTCGTGAAGCTGGGCGCCGATCTCAACCGGG
TGCGGCAGCAGGTCATCCAGCTGCTCTCCGGCTACTCCGGGGGCAAGGAGGCCGCCACCGCCGGCGGTCCCGCCGAGGGC
ACCCCCTCCACGTCCCTTGTCCTCGACCAGTTCGGCCGGAATCTGACCCAGGCCGCCCGCGAATCCAAGCTCGACCCGGT
CATCGGGCGCGAGAAGGAGATCGAGCGGGTCATGCAGGTGCTGTCCCGCCGTACGAAGAACAACCCGGTCCTCATCGGCG
AGCCCGGCGTCGGCAAGACCGCCGTCGTCGAGGGCCTGGCGCAGGCGATCGTCAAGGGCGAGGTGCCCGAGACCCTCAAG
GACAAGCACCTCTACACCCTGGACCTCGGCGCGCTGGTCGCCGGCTCCCGCTACCGCGGTGACTTCGAGGAGCGCCTGAA
GAAGGTCCTCAAGGAGATCCGCACGCGCGGCGACATCATCCTCTTCATCGACGAGCTCCACACCCTGGTGGGTGCGGGCG
CCGCCGAGGGCGCCATCGACGCCGCGTCGATCCTGAAGCCGATGCTGGCCCGCGGTGAGCTCCAGACCATCGGTGCCACC
ACGCTCGACGAGTACCGCAAGTACCTGGAGAAGGACGCCGCGCTGGAGCGCCGCTTCCAGCCGATCCAGGTCGCCGAGCC
GTCCCTGCCGCACACGATCGAGATCCTCAAGGGTCTGCGCGACCGGTATGAGGCGCACCACCGCGTGTCCATCACGGACG
AGGCGCTGGTGCAGGCCGCCACGCTGGCCGACCGGTACATCTCCGACCGCTTCCTGCCGGACAAGGCGATCGACCTCATC
GACGAGGCAGGCTCCCGGATGCGCATCCGCCGGATGACCGCGCCGCCGGACCTGCGCGAGTTCGACGAGAAGATCGCCGG
TGTCCGCCGGGAGAAGGAGTCCGCGATCGACGCGCAGGACTTCGAGAAGGCCGCGTCGCTGCGCGACAAGGAGAAGCAGC
TCCTGGCCGCCAAGGCCAAGCGGGAGAAGGAGTGGAAGGCCGGCGACATGGACGTCGTCGCCGAGGTCGACGGCGAGCTG
ATCGCCGAGGTCCTGGCGACCGCCACCGGCATCCCGGTCTTCAAGCTGACGGAGGAGGAGTCCTCCCGTCTGCTCCGCAT
GGAGGACGAGCTCCACAAGCGCGTCATCGGCCAGAAGGACGCCATTAAGGCCCTGTCGCAGGCCATCCGCCGTACGCGGG
CCGGCCTCAAGGACCCGAAGCGCCCCGGTGGCTCGTTCATCTTCGCCGGCCCGTCCGGTGTCGGTAAGACCGAGCTGTCC
AAGACGCTCGCCGAGTTCCTCTTCGGCGACGAGGACGCGATGATCTCGCTCGACATGTCCGAGTTCAGCGAGAAGCACAC
CGTGTCCCGCCTCTTCGGCTCCCCGCCCGGATACGTGGGCTACGAGGAGGGCGGCCAGCTCACCGAGAAGGTGCGCCGCA
AGCCGTTCTCCGTCGTCCTCTTCGACGAGGTCGAGAAGGCCCACCCCGACATCTTCAACTCCCTGCTCCAGATCCTGGAG
GACGGTCGCCTGACCGACTCCCAGGGCCGGGTCGTGGACTTCAAGAACACGGTCATCATCATGACGACCAACCTCGGGAC
CCGGGACATCTCCAAGGGCTTCAACCTGGGCTTCGCCGCGCAGGGCGACGTCAAGACCGGCTACGACCGGATGAAGGCGA
AGGTCAACGAGGAGCTGAAGCAGCACTTCCGCCCCGAGTTCCTGAACCGTGTCGACGACACCGTCGTCTTCCACCAGCTC
AGCCAGGAAGACATCATCCAGATCGTCGACCTGATGATCGCCAAGGTGGACGAGCGTCTGAAGGACCGCGACATGGGCAT
CGAGCTCAGCGGTGACGCGAAGATCCTCCTGGCGAAGCGGGGCTACGACCCGGTGCTGGGTGCCCGTCCGCTCCGCCGGA
CGATCCAGCGCGAGATCGAGGACATCCTGTCGGAGAAGATCCTCTTCGGCGAGCTGCGCCCCGGTCACATCGTGGTCGTG
GACACCGAGGGCGAGGGTGAGGAGAAGAAGTTCACCTTCCGCGGCGAGGAGAAGTCGGCCCTGCCGGACGTGCCGCCCAT
CGAGGCGGCCGGCGGCCCCGGACCGAACCTCTCCAAGGACGCCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
61.893 |
95.482 |
0.591 |
| clpC | Streptococcus mutans UA159 |
44.337 |
98.692 |
0.438 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
44.54 |
96.908 |
0.432 |
| clpC | Streptococcus thermophilus LMD-9 |
42.619 |
99.881 |
0.426 |
| clpC | Streptococcus thermophilus LMG 18311 |
42.449 |
100 |
0.424 |
| clpC | Streptococcus pneumoniae D39 |
43.75 |
95.125 |
0.416 |
| clpC | Streptococcus pneumoniae Rx1 |
43.75 |
95.125 |
0.416 |
| clpC | Streptococcus pneumoniae TIGR4 |
43.774 |
94.53 |
0.414 |
| clpE | Streptococcus mutans UA159 |
53.834 |
74.435 |
0.401 |
| clpE | Streptococcus pneumoniae TIGR4 |
51.887 |
75.624 |
0.392 |
| clpE | Streptococcus pneumoniae D39 |
51.73 |
75.624 |
0.391 |
| clpE | Streptococcus pneumoniae Rx1 |
51.73 |
75.624 |
0.391 |
| clpE | Streptococcus pneumoniae R6 |
51.73 |
75.624 |
0.391 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
52.581 |
73.722 |
0.388 |