Detailed information NTG0836554

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: U5072_RS15610
• Genome accession: NZ_CP141222
• Coordinates: 3634194..3636803 (+)
• Length: 869 a.a.
• NCBI ID: WP_331452997.1
• Uniprot ID: -
• Organism: Streptomyces sp. SS162
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3629194..3641803

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
U5072_RS15575 (U5072_15575)	dnaJ	3629246..3630442 (+)	1197	WP_031133929.1	molecular chaperone DnaJ	-
U5072_RS15580 (U5072_15580)	-	3630447..3630899 (+)	453	WP_031133927.1	helix-turn-helix domain-containing protein	-
U5072_RS15585 (U5072_15585)	-	3631071..3631655 (+)	585	WP_069977311.1	DUF4232 domain-containing protein	-
U5072_RS15590 (U5072_15590)	-	3631684..3632709 (-)	1026	WP_174887739.1	helix-turn-helix transcriptional regulator	-
U5072_RS15595 (U5072_15595)	-	3632838..3633155 (+)	318	WP_031133922.1	hypothetical protein	-
U5072_RS15600 (U5072_15600)	-	3633152..3633469 (+)	318	WP_031133921.1	hypothetical protein	-
U5072_RS15605 (U5072_15605)	-	3633652..3634065 (-)	414	WP_031133919.1	TIGR03618 family F420-dependent PPOX class oxidoreductase	-
U5072_RS15610 (U5072_15610)	clpC	3634194..3636803 (+)	2610	WP_331452997.1	ATP-dependent chaperone ClpB	Regulator
U5072_RS15615 (U5072_15615)	-	3637131..3637676 (+)	546	WP_069977312.1	YbjN domain-containing protein	-
U5072_RS15620 (U5072_15620)	-	3637831..3639012 (-)	1182	WP_031133913.1	pyridoxal phosphate-dependent aminotransferase	-
U5072_RS15625 (U5072_15625)	-	3639522..3639812 (+)	291	WP_331452998.1	hypothetical protein	-
U5072_RS15630 (U5072_15630)	-	3640368..3640907 (+)	540	WP_069977322.1	DUF2617 family protein	-

Sequence

Protein

• Length: 869 a.a.
• Molecular weight: 94787.08 Da
• Isoelectric Point: 4.7628

>NTDB_id=836554 U5072_RS15610 WP_331452997.1 3634194..3636803(+) (clpC) [Streptomyces sp. SS162]
MDAELTNKSRDALNAATSRAVSDGHPDLTPAHLLLALLSGQENENLTDLLAAVDADQAAVRSGAERILAGLPSVTGSTVA
PPQPNRDLLAVVADAQARARELGDEYLSTEHLLIGIAAKGGPAGELLTREGADARKLLDAFTRSRGTRRVTTPDPEGQYK
ALEKFGTDFTAAAREGKLDPVIGRDQEIRRVVQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVKGDVPESLRDKRLVA
LDLGAMVAGAKYRGEFEERLKTVLSEIKESDGQIITFIDELHTVVGAGAGSDSAMDAGNMLKPMLARGELRMVGATTLDE
YRERIEKDPALERRFQQVLVAEPTVEDTIAILRGLKGRYEAHHKVQIADSALVAAATLSDRYITSRFLPDKAIDLVDEAA
SRLRMEIDSSPVEIDELQRAVDRLRMEELALKNETDPGSLQRLEKLRRDLADKEEELRGLTARWEKEKQGLNRVGELKER
LDDLRGQAERAQRDGDFDTASKLLYGEIPAVERELAAATEAEQEAAKTAGGAAGADKMVKEEVGPDDIADVVGSWTGIPA
GRLLEGETQKLLRMEEELGRRLIGQTEAVRAVSDAVRRTRAGIADPDRPTGSFLFLGPTGVGKTELAKALADFLFDDERA
MVRIDMSEYGEKHSVARLVGAPPGYVGYEEGGQLTEAVRRRPYSVILLDEVEKAHPEVFDILLQVLDDGRLTDGQGRTVD
FRNTILVLTSNLGSQFLTEPTTTEAEKREQVLEVVRASFKPEFLNRLDDIVVFSALSRDELARIATLQVGSLARRLAERR
LTLDVTPAALEWLADEGNDPAYGARPLRRLVQTAIGDRLAREILSGEVRDGDTVRVDRADGGLSVTAVR

Nucleotide

• Length: 2610 bp

>NTDB_id=836554 U5072_RS15610 WP_331452997.1 3634194..3636803(+) (clpC) [Streptomyces sp. SS162]
GTGGACGCCGAGCTGACCAACAAGAGCCGGGACGCGCTCAACGCCGCCACCAGCCGCGCCGTGTCCGACGGACACCCCGA
CCTGACCCCGGCGCACCTGCTGCTGGCCCTGCTGTCCGGCCAGGAGAACGAGAACCTCACCGACCTGCTCGCCGCCGTCG
ACGCGGACCAGGCCGCCGTCCGCTCGGGGGCCGAGCGCATCCTCGCCGGCCTGCCCAGCGTCACCGGGTCCACCGTCGCC
CCGCCGCAGCCCAACCGGGACCTGCTCGCCGTCGTGGCGGACGCCCAGGCCCGCGCCCGCGAGCTGGGCGACGAGTACCT
GTCGACCGAGCACCTGCTGATCGGCATCGCCGCCAAGGGCGGGCCGGCCGGCGAGCTGCTCACCCGCGAGGGCGCCGACG
CGAGGAAGCTCCTGGACGCCTTCACCCGCTCGCGCGGCACGCGCCGGGTGACCACCCCCGACCCGGAGGGGCAGTACAAG
GCGCTGGAGAAGTTCGGCACGGACTTCACCGCCGCCGCCCGCGAGGGCAAGCTCGACCCGGTCATCGGCCGCGACCAGGA
GATCCGCCGGGTCGTCCAGGTCCTCTCGCGCCGCACCAAGAACAACCCGGTCCTCATCGGCGAGCCCGGCGTCGGCAAGA
CCGCCGTCGTGGAGGGCCTCGCCCAGCGCATCGTGAAGGGCGACGTCCCCGAGTCGCTGCGCGACAAGCGGCTCGTCGCC
CTCGACCTGGGCGCCATGGTCGCCGGGGCGAAGTACCGCGGCGAGTTCGAGGAGCGCCTGAAGACCGTCCTGTCCGAGAT
CAAGGAGAGCGACGGCCAGATCATCACCTTCATCGACGAGCTGCACACCGTCGTCGGCGCGGGCGCGGGCAGCGACTCCG
CCATGGACGCGGGGAACATGCTCAAGCCCATGCTGGCCCGCGGCGAGCTGCGCATGGTCGGCGCGACCACCCTCGACGAG
TACCGCGAGCGCATCGAGAAGGACCCCGCGCTGGAGCGCCGCTTCCAGCAGGTCCTGGTCGCCGAGCCGACCGTCGAGGA
CACCATCGCGATCCTGCGCGGCCTGAAGGGCCGGTACGAGGCCCACCACAAGGTCCAGATCGCTGACTCGGCGCTGGTCG
CCGCCGCCACCCTCTCCGACCGGTACATCACCTCCCGCTTCCTGCCCGACAAGGCGATCGACCTGGTGGACGAGGCGGCG
TCGCGGCTCCGCATGGAGATCGACTCCTCGCCCGTGGAGATCGACGAGCTCCAGCGCGCCGTCGACCGGCTCCGCATGGA
GGAGCTGGCCCTGAAGAACGAGACGGACCCCGGCTCCCTCCAGCGCCTGGAGAAGCTGCGCCGCGACCTCGCCGACAAGG
AGGAGGAGCTGCGCGGCCTCACCGCCCGCTGGGAGAAGGAGAAGCAGGGCCTCAACCGCGTCGGTGAGCTGAAGGAGCGC
CTGGACGACCTGCGCGGCCAGGCCGAGCGCGCCCAGCGCGACGGCGACTTCGACACGGCGTCCAAGCTGCTGTACGGGGA
GATCCCGGCCGTCGAGCGTGAGCTGGCCGCCGCCACGGAGGCCGAGCAGGAGGCGGCCAAGACCGCCGGGGGCGCCGCGG
GCGCGGACAAGATGGTGAAGGAGGAGGTCGGCCCGGACGACATCGCGGACGTCGTCGGCTCCTGGACCGGCATCCCCGCC
GGGCGGCTCCTGGAGGGCGAGACGCAGAAGCTGCTGCGCATGGAGGAGGAGCTGGGACGGCGCCTCATCGGACAGACCGA
GGCCGTACGGGCCGTGTCGGACGCCGTGCGCCGCACGCGCGCCGGCATCGCCGACCCGGACCGGCCGACCGGCTCCTTCC
TCTTCCTCGGGCCGACCGGCGTCGGCAAGACCGAGCTGGCGAAGGCGCTCGCCGACTTCCTCTTCGACGACGAGCGGGCG
ATGGTCCGCATCGACATGTCGGAGTACGGCGAGAAGCACTCCGTCGCCCGGCTCGTCGGCGCGCCCCCCGGCTACGTCGG
CTACGAGGAGGGCGGCCAGCTCACGGAGGCGGTGCGCCGCCGCCCGTACAGCGTGATCCTGCTGGACGAGGTGGAGAAGG
CACACCCGGAGGTTTTCGACATCCTGCTCCAGGTCCTGGACGACGGGCGGCTCACCGACGGGCAGGGCCGCACGGTCGAC
TTCCGCAACACGATCCTGGTGCTCACGTCGAACCTGGGCAGCCAGTTCCTGACGGAGCCGACGACCACGGAGGCCGAGAA
GCGGGAGCAGGTGCTGGAGGTCGTGCGCGCCTCCTTCAAGCCGGAGTTCCTGAACCGGCTCGACGACATCGTGGTCTTCT
CGGCCCTCAGCCGGGACGAGCTGGCCCGGATCGCCACGCTCCAGGTCGGCAGCCTGGCACGGCGCCTCGCGGAGCGCCGC
CTCACGCTGGACGTCACCCCGGCGGCCCTGGAGTGGCTCGCCGACGAGGGCAACGACCCGGCGTACGGCGCGCGGCCGCT
GCGCCGCCTGGTCCAGACGGCCATCGGCGACCGGCTGGCCCGGGAGATCCTGTCCGGCGAGGTGCGGGACGGCGACACGG
TCCGTGTGGACCGCGCCGACGGAGGGCTGTCGGTGACCGCCGTCCGCTGA

Domains

Predicted by InterProScan.

• AAA lid domain (AAA_lid_9) (344-446)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (18-68)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (95-146)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (776-856)

• ATPase family associated with various cellular activities (AAA) (AAA) (204-338)

• AAA domain (Cdc48 subfamily) (AAA_2) (608-770)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	45.403	100	0.46
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	44.78	83.774	0.375
clpE	Streptococcus mutans UA159	46.706	78.596	0.367