Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   QNH23_RS05030 Genome accession   NZ_CP126113
Coordinates   981999..983120 (+) Length   373 a.a.
NCBI ID   WP_120068469.1    Uniprot ID   A0A443J447
Organism   Siminovitchia fortis strain XLM16     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 976999..988120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH23_RS05005 (QNH23_05005) - 977826..978032 (+) 207 WP_120068971.1 YqgQ family protein -
  QNH23_RS05010 (QNH23_05010) - 978271..980160 (+) 1890 WP_208646252.1 LTA synthase family protein -
  QNH23_RS05015 (QNH23_05015) - 980244..980411 (-) 168 WP_120068479.1 DUF2759 domain-containing protein -
  QNH23_RS05020 (QNH23_05020) - 980641..981264 (+) 624 WP_120068475.1 MBL fold metallo-hydrolase -
  QNH23_RS05025 (QNH23_05025) - 981516..981761 (-) 246 WP_120068472.1 DUF2626 domain-containing protein -
  QNH23_RS05030 (QNH23_05030) comGA 981999..983120 (+) 1122 WP_120068469.1 competence type IV pilus ATPase ComGA Machinery gene
  QNH23_RS05035 (QNH23_05035) comGB 983035..984090 (+) 1056 WP_120068466.1 competence type IV pilus assembly protein ComGB -
  QNH23_RS05040 (QNH23_05040) comGC 984111..984434 (+) 324 WP_120068464.1 competence type IV pilus major pilin ComGC -
  QNH23_RS05045 (QNH23_05045) comGD 984436..984885 (+) 450 WP_120068461.1 competence type IV pilus minor pilin ComGD -
  QNH23_RS05050 (QNH23_05050) - 984872..985180 (+) 309 WP_120068458.1 hypothetical protein -
  QNH23_RS05055 (QNH23_05055) comGF 985152..985646 (+) 495 WP_120068454.1 competence type IV pilus minor pilin ComGF -
  QNH23_RS05060 (QNH23_05060) - 985658..985948 (+) 291 WP_128205388.1 hypothetical protein -
  QNH23_RS05065 (QNH23_05065) - 986004..986213 (+) 210 WP_120068449.1 YqzE family protein -
  QNH23_RS05070 (QNH23_05070) - 986199..986993 (-) 795 WP_120068446.1 YqhG family protein -

Sequence

Protein


Download         Length: 373 a.a.        Molecular weight: 42400.95 Da        Isoelectric Point: 8.8189

>NTDB_id=836535 QNH23_RS05030 WP_120068469.1 981999..983120(+) (comGA) [Siminovitchia fortis strain XLM16]
MTIERTADLLISEAVRLNASDIHIIPRRQDYLVKLRVHGQLGHYGTLPPIAGERLISHLKFMASMDIGERRKPQSGSWQT
HTRNTFVALRISTLPSTLSKESLVIRIFPQNHSFFLEKMSLFPKSMLRLISMMSHSHGMLIFTGPTGSGKTSTIYSLAEY
CASELNRNIITLEDPVERQSDQFLQMQVNEKAGITYQAGLKAVLRHDPDMIFVGEIRDAETAEIAVRAAMTGHLVLTSMH
TRNAEGAVYRLLEFGIKPLEIEQTLIGVTAQRLVSLLCPFCGDKCSKYCAGAHKIKRAAVFEILEGERLERIIRMTWGST
GPKDADYVYSLKRLIRKGIALGYISHEEYRRWIFQEREEAEPERSRFFSDENQ

Nucleotide


Download         Length: 1122 bp        

>NTDB_id=836535 QNH23_RS05030 WP_120068469.1 981999..983120(+) (comGA) [Siminovitchia fortis strain XLM16]
ATGACAATTGAAAGAACAGCCGATTTGCTGATTTCAGAGGCAGTACGGCTAAACGCTTCCGATATCCACATCATTCCGCG
CCGTCAGGATTACCTCGTTAAGCTCCGTGTCCACGGGCAGCTGGGCCACTATGGAACCCTTCCGCCAATCGCAGGAGAAA
GACTTATATCACATTTGAAATTCATGGCCTCGATGGATATTGGAGAAAGAAGAAAGCCTCAGAGCGGGTCCTGGCAAACA
CATACCCGCAATACTTTCGTGGCGCTTCGAATCTCCACACTGCCATCCACACTCTCCAAAGAAAGCCTGGTTATTAGAAT
CTTCCCGCAAAATCACTCTTTTTTCCTTGAAAAAATGTCCCTATTTCCCAAAAGCATGCTGCGGCTTATTTCAATGATGT
CCCATTCACACGGGATGCTCATTTTCACAGGCCCGACAGGATCCGGAAAAACCTCGACCATCTATTCACTCGCGGAGTAT
TGTGCATCCGAGTTGAACCGCAATATTATTACATTGGAGGATCCGGTAGAAAGGCAGAGCGACCAGTTTTTGCAGATGCA
GGTCAATGAAAAAGCCGGCATCACGTATCAAGCAGGATTAAAGGCAGTACTGCGCCATGATCCTGACATGATTTTTGTTG
GAGAGATAAGGGATGCCGAAACGGCTGAGATCGCTGTGCGGGCAGCGATGACCGGACACCTCGTCCTGACAAGCATGCAT
ACACGAAACGCTGAGGGCGCCGTGTACCGGCTTCTGGAATTCGGAATAAAGCCATTGGAAATTGAACAAACCTTGATAGG
GGTCACAGCCCAGCGGCTCGTCTCTTTGCTATGCCCTTTTTGCGGAGACAAATGTTCGAAATATTGTGCCGGGGCCCATA
AGATTAAACGGGCAGCTGTTTTTGAGATATTGGAAGGGGAGCGGCTGGAAAGGATTATTCGAATGACTTGGGGATCCACA
GGCCCAAAAGACGCCGACTATGTCTACTCATTAAAAAGATTAATCAGAAAGGGGATTGCGCTTGGATATATCTCTCATGA
AGAATATCGCCGGTGGATTTTTCAGGAAAGAGAAGAAGCTGAACCTGAAAGATCAAGGTTTTTTTCTGACGAAAATCAGT
GA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A443J447

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

56.546

96.247

0.544