Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   QNH37_RS18125 Genome accession   NZ_CP126112
Coordinates   3796739..3798454 (-) Length   571 a.a.
NCBI ID   WP_283897321.1    Uniprot ID   -
Organism   Peribacillus simplex strain WH6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3791739..3803454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH37_RS18105 (QNH37_18105) - 3792526..3792762 (+) 237 WP_101222519.1 DUF2627 domain-containing protein -
  QNH37_RS18110 (QNH37_18110) - 3792805..3793539 (-) 735 WP_283897319.1 glycerophosphodiester phosphodiesterase -
  QNH37_RS18115 (QNH37_18115) spo0A 3794163..3794954 (-) 792 WP_283897320.1 sporulation transcription factor Spo0A -
  QNH37_RS18120 (QNH37_18120) spoIVB 3795285..3796577 (-) 1293 WP_076365437.1 SpoIVB peptidase -
  QNH37_RS18125 (QNH37_18125) recN 3796739..3798454 (-) 1716 WP_283897321.1 DNA repair protein RecN Machinery gene
  QNH37_RS18130 (QNH37_18130) argR 3798477..3798926 (-) 450 WP_034308279.1 transcriptional regulator ArgR -
  QNH37_RS18135 (QNH37_18135) - 3799252..3800079 (-) 828 WP_283897322.1 TlyA family RNA methyltransferase -
  QNH37_RS18140 (QNH37_18140) dxs 3800084..3801976 (-) 1893 WP_283897324.1 1-deoxy-D-xylulose-5-phosphate synthase -
  QNH37_RS18145 (QNH37_18145) - 3802226..3803119 (-) 894 WP_283897326.1 polyprenyl synthetase family protein -
  QNH37_RS18150 (QNH37_18150) - 3803121..3803354 (-) 234 WP_034308286.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 571 a.a.        Molecular weight: 64501.46 Da        Isoelectric Point: 5.2172

>NTDB_id=836490 QNH37_RS18125 WP_283897321.1 3796739..3798454(-) (recN) [Peribacillus simplex strain WH6]
MLTELSIRNFAIIDSLSVSFEKGLTVLTGETGAGKSIIIDAVHLLVGGRGSAEFIRHGESKAEIEGLFQIEDEKHPVFVK
AEEFGIDMNDGMAILRRDISLSGKSVCRVNGKLVTISTLREIGRTLIDIHGQHEHQELMDERLHLPLLDQFGGEKIASAL
TEYQKLYKRYETASKQLNGLSQNEQQMVHRLDLIQFQFDEIQKADLKLREDEELMEERKKINNFEKIHEALQTSYNALNG
EQHAIDWLSVAMNNLEEAAGLDEGLKNSSETVSNSYFLLEEAVSNIRDQLDSLDYDTERVEFIESRLNEINQLKRKYGRT
IEEILEYGAAIEEEVEKLQNRETHIAKLEKEMKSIKADLIVEAKNLSELRQKFAQQLTKKIHQELKDLYMEKTIFEPHFL
QTAYTFDELSDRGINQSGLDSMEFYISTNPGEPLKPLSKIASGGELSRIMLALKSIFSKHQGITSIIFDEVDTGVSGRVA
QSIAEKIYKVATGSQVLCISHLPQVAAMADTHLFIAKNVRAGRTNTSVKPLIETEKIKEIGRMISGVEITDLTKQHANEL
IQLAKRLKITS

Nucleotide


Download         Length: 1716 bp        

>NTDB_id=836490 QNH37_RS18125 WP_283897321.1 3796739..3798454(-) (recN) [Peribacillus simplex strain WH6]
TTGTTAACAGAACTATCGATTAGGAATTTTGCGATCATAGACAGCCTGTCCGTTTCATTTGAGAAAGGCTTGACGGTCTT
GACAGGAGAAACAGGGGCAGGGAAGTCAATCATAATAGATGCAGTTCATCTTTTGGTTGGGGGACGTGGTTCTGCAGAGT
TCATTCGGCATGGTGAGTCGAAGGCTGAAATAGAAGGATTATTCCAAATTGAAGATGAAAAACACCCGGTCTTTGTCAAA
GCTGAAGAGTTTGGCATCGATATGAATGATGGGATGGCGATACTTCGAAGGGATATCTCACTGAGCGGCAAAAGCGTTTG
CAGGGTAAATGGAAAGCTTGTAACGATTTCCACCTTACGTGAGATAGGACGGACGTTGATAGATATCCATGGTCAGCATG
AACATCAGGAATTAATGGACGAACGACTCCATCTTCCACTGCTCGATCAATTCGGCGGTGAAAAAATCGCATCTGCACTC
ACTGAATACCAAAAGCTATATAAACGTTATGAAACCGCTTCTAAACAATTGAATGGTTTGAGCCAAAATGAACAGCAAAT
GGTCCACCGCCTTGATTTGATCCAATTTCAATTCGATGAAATCCAAAAAGCTGATTTGAAGTTACGCGAAGATGAAGAAT
TGATGGAAGAGCGGAAGAAAATTAATAATTTCGAAAAAATCCATGAAGCGCTGCAAACCAGTTATAATGCTTTAAATGGT
GAGCAGCATGCAATTGATTGGCTTTCCGTAGCCATGAATAATTTGGAGGAAGCGGCAGGGCTTGATGAAGGTTTAAAGAA
CAGCTCTGAAACCGTTTCAAATAGCTACTTCCTGCTTGAAGAGGCCGTGTCTAACATCCGTGACCAATTAGACTCTTTGG
ATTATGATACAGAGCGAGTGGAATTCATTGAAAGTCGCCTTAATGAAATAAATCAATTAAAGCGTAAATACGGGCGGACC
ATCGAGGAAATCCTGGAATATGGGGCCGCTATTGAAGAAGAAGTCGAAAAACTGCAAAATAGGGAAACCCATATAGCGAA
GCTTGAAAAGGAAATGAAATCCATCAAGGCAGATTTAATTGTCGAAGCAAAGAATCTGTCTGAACTTCGCCAGAAATTCG
CTCAGCAGCTAACCAAAAAGATTCATCAGGAATTAAAAGATTTATACATGGAAAAGACAATTTTCGAACCACATTTCCTT
CAAACGGCTTATACTTTCGATGAATTGTCAGATAGGGGCATCAATCAGTCAGGGCTGGATTCAATGGAATTTTATATTTC
CACCAATCCAGGTGAACCATTAAAACCTCTTTCTAAAATCGCATCTGGTGGTGAACTGTCGAGGATTATGCTGGCATTGA
AAAGCATATTCTCCAAGCACCAAGGCATAACTTCCATTATCTTTGATGAAGTGGACACAGGTGTGAGCGGACGGGTTGCG
CAATCCATTGCCGAAAAGATCTATAAAGTGGCAACTGGATCACAAGTATTGTGCATATCCCATTTGCCACAGGTGGCAGC
TATGGCGGATACTCACCTTTTCATAGCGAAAAATGTAAGGGCCGGACGCACGAATACCTCGGTAAAGCCGTTAATTGAAA
CTGAAAAAATAAAAGAAATTGGCAGGATGATTTCAGGAGTAGAGATAACGGATTTGACGAAACAACATGCCAATGAATTA
ATCCAGCTTGCCAAAAGGCTGAAAATTACATCTTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-233)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

60.938

100

0.615