Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   QNH37_RS06420 Genome accession   NZ_CP126112
Coordinates   1346113..1347930 (+) Length   605 a.a.
NCBI ID   WP_283901572.1    Uniprot ID   -
Organism   Peribacillus simplex strain WH6     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1341113..1352930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH37_RS06400 (QNH37_06400) spxA 1341436..1341831 (+) 396 WP_034314502.1 transcriptional regulator SpxA -
  QNH37_RS06405 (QNH37_06405) mecA 1342327..1342995 (+) 669 WP_034314498.1 adaptor protein MecA -
  QNH37_RS06410 (QNH37_06410) cls 1343110..1344618 (+) 1509 WP_283901570.1 cardiolipin synthase -
  QNH37_RS06415 (QNH37_06415) - 1344712..1345920 (+) 1209 WP_283901571.1 competence protein CoiA family protein -
  QNH37_RS06420 (QNH37_06420) pepF 1346113..1347930 (+) 1818 WP_283901572.1 oligoendopeptidase F Regulator
  QNH37_RS06425 (QNH37_06425) - 1348861..1349727 (-) 867 WP_283902725.1 ClpXP adapter SpxH family protein -
  QNH37_RS06430 (QNH37_06430) - 1349751..1350155 (-) 405 WP_283901573.1 globin -
  QNH37_RS06435 (QNH37_06435) - 1350391..1351050 (-) 660 WP_283901574.1 lytic transglycosylase domain-containing protein -
  QNH37_RS06440 (QNH37_06440) - 1351082..1351660 (-) 579 WP_283901575.1 CYTH domain-containing protein -
  QNH37_RS06445 (QNH37_06445) - 1351978..1352598 (+) 621 WP_034314484.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69876.24 Da        Isoelectric Point: 4.6827

>NTDB_id=836481 QNH37_RS06420 WP_283901572.1 1346113..1347930(+) (pepF) [Peribacillus simplex strain WH6]
MAQETKANTLPSRSEIAPEDTWRLEDIFATEEDWEAAFKAVKEDLKKAEAHKGTLGESAERLFAALQLQDEVFEKLGKVY
SYSHMRNDQDTTNPFYQGMEDRAKALYAQAAAAFSYMVPELLSIDENKVEAFLEEKEDLKLYKHSLEEINLQRPHILSAE
QEELLAQASEVLDASGNTFGMLNNADLKFPTIKDEEGNEVEITHGRYISFLESEDRRVREEAFKGVYSKYGEFRNTFAST
LSGEVKNHNFNATVRKYDSARQAALSNNNIPETVYDNLVKTVNDNLPLLHRYLDLRKKVLQLDELHMYDLFTPLVKEVKM
EVTYDEAKDYVLKGLAPLGEDYLNVLKEGFENRWVDVHENKGKRSGAYSSGTYGTNPYILMNWQNNVNNLFTLVHEFGHS
VHSYYTRKYQPYPYGNYSIFVAEVASTCNENLLNDYLLNSIEDEKKRIYLLNHYLEGFRGTLFRQTMFAEFEHTIHLKAQ
NGEALTADMLTKEYYELNRKYFGENVTIDEEIGLEWARIPHFYYNYYVYQYATGISAATALSKQILEEGEPAVKRYLEFL
KSGSSDYPIEVLKKAGVDMTKAEPVQEAMNVFEEKLNELEELLNK

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=836481 QNH37_RS06420 WP_283901572.1 1346113..1347930(+) (pepF) [Peribacillus simplex strain WH6]
ATGGCACAGGAAACAAAAGCGAATACATTACCTTCAAGAAGTGAAATAGCTCCTGAAGATACTTGGAGACTGGAAGATAT
CTTCGCAACCGAGGAAGATTGGGAAGCTGCCTTCAAAGCGGTAAAAGAAGACCTCAAGAAAGCGGAGGCACATAAAGGGA
CGTTGGGAGAAAGTGCAGAAAGATTATTTGCGGCACTTCAACTCCAAGATGAGGTATTCGAGAAGCTAGGGAAAGTTTAT
TCTTATTCACATATGCGCAATGATCAAGATACAACCAATCCTTTTTATCAAGGGATGGAGGATCGGGCAAAAGCTTTATA
CGCCCAGGCAGCGGCTGCGTTTTCATATATGGTTCCTGAACTATTGAGTATTGATGAAAACAAAGTGGAAGCGTTTTTGG
AAGAAAAAGAAGATCTGAAATTATACAAACATTCTTTAGAGGAAATTAATCTTCAGAGACCCCATATCTTATCTGCAGAG
CAGGAAGAATTATTGGCACAAGCATCAGAAGTACTTGATGCATCGGGCAACACTTTCGGTATGCTTAACAATGCCGATTT
GAAATTCCCGACCATCAAGGATGAAGAGGGAAATGAAGTGGAAATTACTCACGGAAGGTATATCAGTTTTCTTGAGAGTG
AAGATCGCCGTGTACGTGAGGAGGCATTTAAAGGGGTATACAGCAAGTATGGAGAGTTCCGTAATACATTTGCTTCAACC
CTGTCAGGTGAGGTGAAAAACCACAACTTCAATGCCACGGTTCGAAAATATGATTCAGCACGCCAAGCGGCGTTAAGCAA
TAATAACATTCCGGAGACCGTATACGATAATCTCGTTAAAACGGTCAATGACAACTTGCCATTACTGCACCGTTATCTTG
ATTTACGTAAAAAAGTACTGCAATTAGATGAACTTCATATGTATGATCTATTCACTCCTCTTGTTAAAGAAGTGAAGATG
GAAGTGACATATGACGAGGCCAAAGATTATGTCCTTAAAGGTCTTGCTCCGCTTGGGGAGGACTATTTGAACGTTTTGAA
AGAGGGATTTGAAAACCGTTGGGTCGATGTGCATGAAAACAAAGGGAAACGAAGTGGTGCCTATTCTTCTGGTACATATG
GGACGAATCCTTATATTTTAATGAACTGGCAAAATAACGTCAATAACTTATTCACGCTCGTTCATGAGTTTGGGCATTCG
GTTCATAGCTACTATACACGTAAATATCAGCCATATCCATACGGAAATTATTCCATATTTGTAGCTGAAGTTGCATCGAC
TTGTAATGAAAACCTGTTGAACGATTATTTACTGAATTCAATCGAAGATGAAAAGAAACGCATCTATTTATTGAATCATT
ACCTGGAAGGTTTCCGCGGCACATTGTTCCGGCAAACGATGTTTGCAGAGTTTGAACATACGATTCATTTAAAAGCTCAA
AATGGGGAAGCGTTGACAGCGGATATGCTTACTAAGGAATATTATGAGCTTAACAGGAAATACTTTGGAGAGAACGTGAC
CATTGATGAAGAAATCGGTTTGGAATGGGCGCGTATTCCACACTTCTACTATAATTACTATGTATATCAATATGCAACAG
GAATCAGTGCAGCAACTGCATTGAGCAAGCAAATCCTTGAAGAAGGAGAGCCTGCTGTCAAAAGGTATTTGGAGTTCTTG
AAGTCAGGAAGTTCCGATTATCCGATTGAAGTGCTCAAAAAGGCTGGCGTCGATATGACAAAAGCCGAACCTGTACAAGA
AGCCATGAATGTATTCGAAGAAAAATTAAATGAGTTGGAAGAGCTTTTGAATAAATAG

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(210-590)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.673

98.182

0.498