Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   QNH20_RS17970 Genome accession   NZ_CP126110
Coordinates   3731485..3733188 (-) Length   567 a.a.
NCBI ID   WP_283919346.1    Uniprot ID   -
Organism   Neobacillus sp. WH10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3726485..3738188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH20_RS17945 (QNH20_17945) - 3727539..3727772 (+) 234 WP_283919342.1 DUF2627 domain-containing protein -
  QNH20_RS17950 (QNH20_17950) - 3727876..3728604 (-) 729 WP_283923443.1 glycerophosphodiester phosphodiesterase -
  QNH20_RS17955 (QNH20_17955) - 3728643..3728783 (+) 141 WP_283919343.1 YycC family protein -
  QNH20_RS17960 (QNH20_17960) spo0A 3728862..3729653 (-) 792 WP_283919344.1 sporulation transcription factor Spo0A -
  QNH20_RS17965 (QNH20_17965) spoIVB 3730000..3731289 (-) 1290 WP_283919345.1 SpoIVB peptidase -
  QNH20_RS17970 (QNH20_17970) recN 3731485..3733188 (-) 1704 WP_283919346.1 DNA repair protein RecN Machinery gene
  QNH20_RS17975 (QNH20_17975) argR 3733205..3733654 (-) 450 WP_283919347.1 transcriptional regulator ArgR -
  QNH20_RS17980 (QNH20_17980) - 3733806..3734636 (-) 831 WP_283919348.1 TlyA family RNA methyltransferase -
  QNH20_RS17985 (QNH20_17985) dxs 3734640..3736535 (-) 1896 WP_283919349.1 1-deoxy-D-xylulose-5-phosphate synthase -
  QNH20_RS17990 (QNH20_17990) - 3736722..3737615 (-) 894 WP_283919350.1 polyprenyl synthetase family protein -
  QNH20_RS17995 (QNH20_17995) - 3737619..3737852 (-) 234 WP_283919351.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 567 a.a.        Molecular weight: 64148.09 Da        Isoelectric Point: 5.1680

>NTDB_id=836446 QNH20_RS17970 WP_283919346.1 3731485..3733188(-) (recN) [Neobacillus sp. WH10]
MLAELSIKNFAIIEALSISFEKGLTVLTGETGAGKSIIIDAIHLLVGGRGSAEFVRHGEEKAEIEGLFQLDDPNHPVMIK
ALEFGIDIEEGMVVLRRDISRTGKSVCRINGKLVTISTLREIGGTLVDIHGQHEHQELMDETRHLPLLDQFGSEEIKDSL
DEYIQVFRRYEHTLHKLKHLSENDQQTAHRLDLIQFQLDEIQKADLKPREDEELSEEKRKLGNFERVFEAIQSGYTALHG
EQKGLDWIGMVMGYLEDAATLDSAYKEIFESISNSFYQLEDAARSLRNELDVLEYDPGRLNEIDDRLNEINQLKRKYGKT
IDEIVEYAIKIEEEIETLQNKETHIGELEKELSSIRKDLVLEAKQLTELRHKWAEKLTKLIHKELKELYMAKTVFDIRFE
SDLQHFSKNGVDHVEFYISTNPGEPLKPLSKVASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGVSGRVAQSIAEKIY
KVASGSQVMCISHLPQVAAMADTHLFIAKIIKGGRTKTSVTPLGIEEKIKEIGRMISGAEITDLTKKHAEELLYLAEENK
NRTFTGS

Nucleotide


Download         Length: 1704 bp        

>NTDB_id=836446 QNH20_RS17970 WP_283919346.1 3731485..3733188(-) (recN) [Neobacillus sp. WH10]
TTGTTAGCAGAATTATCAATAAAAAATTTCGCCATTATCGAAGCCCTATCCATCTCTTTTGAAAAAGGATTGACCGTTTT
AACCGGTGAAACAGGTGCCGGAAAGTCCATTATAATTGATGCGATTCATTTACTAGTAGGCGGAAGGGGATCAGCAGAAT
TCGTCCGTCACGGAGAAGAAAAGGCAGAAATAGAAGGTTTATTCCAACTAGATGACCCAAACCATCCAGTTATGATTAAA
GCACTCGAATTTGGGATTGACATTGAAGAAGGAATGGTAGTTTTACGTCGAGATATTTCCAGAACAGGAAAAAGTGTTTG
TCGTATAAACGGAAAATTGGTTACAATATCAACGCTTCGAGAAATTGGCGGCACCCTTGTTGATATCCATGGACAGCATG
AGCATCAGGAATTGATGGATGAGACAAGACATTTACCATTGCTTGATCAATTCGGATCTGAAGAAATAAAAGATTCTCTC
GACGAATACATACAGGTATTTCGACGATATGAGCATACATTACATAAGCTTAAACATTTGAGCGAAAATGATCAGCAAAC
AGCACATCGTCTAGATTTAATTCAATTTCAATTAGATGAGATTCAAAAGGCCGATTTAAAACCCCGTGAAGATGAAGAAC
TTTCCGAGGAAAAAAGAAAACTGGGTAATTTCGAACGTGTATTTGAAGCGATCCAATCAGGCTATACAGCCTTACATGGT
GAACAGAAGGGGCTTGATTGGATTGGTATGGTCATGGGTTACCTTGAAGATGCTGCCACACTGGATTCGGCATATAAAGA
AATATTTGAATCCATATCAAACAGCTTTTATCAATTGGAGGATGCAGCGCGCTCTTTAAGAAATGAATTAGATGTATTAG
AGTACGATCCTGGGCGGTTAAATGAAATTGATGACCGATTAAATGAAATTAACCAATTAAAACGCAAATATGGCAAAACA
ATTGATGAAATAGTTGAATATGCGATAAAAATTGAAGAAGAAATTGAAACACTTCAAAATAAAGAAACGCATATTGGAGA
ATTGGAAAAAGAACTAAGTTCCATTCGAAAAGACTTAGTTCTTGAAGCTAAGCAATTAACCGAACTTCGTCATAAATGGG
CTGAAAAGCTAACAAAATTAATCCATAAAGAACTAAAAGAATTGTATATGGCAAAAACGGTTTTTGATATTCGTTTTGAA
TCCGATCTTCAGCATTTTTCAAAAAATGGAGTCGACCATGTCGAATTTTATATTTCAACGAATCCAGGAGAACCATTGAA
GCCATTATCAAAAGTTGCATCTGGAGGAGAATTATCACGAATCATGCTGGCCCTAAAGAGTATTTTTTCCAAGCATCAAG
GAGTTACTTCCATTATTTTCGACGAAGTGGATACTGGTGTTAGTGGGAGGGTTGCCCAATCAATTGCAGAAAAAATCTAT
AAAGTTGCGTCAGGTTCACAGGTTATGTGTATATCCCATTTACCACAAGTGGCAGCAATGGCCGATACACATTTATTTAT
TGCCAAGATTATTAAAGGGGGAAGAACGAAAACATCTGTCACTCCTTTAGGTATTGAAGAAAAAATTAAAGAAATTGGCC
GGATGATTTCTGGTGCAGAAATCACTGATTTAACGAAAAAACATGCAGAGGAATTACTTTATTTAGCTGAAGAAAATAAA
AATCGGACTTTTACGGGTAGTTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

60.696

100

0.616