Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NLM83_RS00705 Genome accession   NZ_CP141204
Coordinates   127114..127743 (+) Length   209 a.a.
NCBI ID   WP_000839151.1    Uniprot ID   B7UN38
Organism   Escherichia coli strain WGS1363     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 122114..132743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLM83_RS00685 (NLM83_00685) ycbZ 122504..124264 (-) 1761 WP_000156502.1 AAA family ATPase -
  NLM83_RS00690 (NLM83_00690) matP 124450..124902 (+) 453 WP_000877153.1 macrodomain Ter protein MatP -
  NLM83_RS00695 (NLM83_00695) ompA 124978..126030 (-) 1053 WP_001346420.1 porin OmpA -
  NLM83_RS00700 (NLM83_00700) sulA 126386..126895 (-) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  NLM83_RS00705 (NLM83_00705) sxy/tfoX 127114..127743 (+) 630 WP_000839151.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  NLM83_RS00710 (NLM83_00710) yccS 127706..129868 (-) 2163 WP_000875041.1 YccS family putative transporter -
  NLM83_RS00715 (NLM83_00715) yccF 129878..130324 (-) 447 WP_001261235.1 YccF domain-containing protein -
  NLM83_RS00720 (NLM83_00720) helD 130447..132501 (+) 2055 WP_001295938.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24163.08 Da        Isoelectric Point: 9.0428

>NTDB_id=836443 NLM83_RS00705 WP_000839151.1 127114..127743(+) (sxy/tfoX) [Escherichia coli strain WGS1363]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
CLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=836443 NLM83_RS00705 WP_000839151.1 127114..127743(+) (sxy/tfoX) [Escherichia coli strain WGS1363]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
TGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCAGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7UN38

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995